Unprecedented detail on HIV structure reveals surprises
Surprisingly, the building blocks in immature HIV (centre) are arranged differently from those of immature Mason-Pfizer Monkey Virus (top). To form the mature virus, HIV’s building blocks take on yet another arrangement (bottom).
In a nutshell:
Unprecedentedly detailed structure of immature HIV
Virus’ building blocks arranged differently than expected
Scientists at the European Molecular Biology Laboratory (EMBL) in Heidelberg, Germany and collaborators from Heidelberg University, in the joint Molecular Medicine Partnership Unit, have obtained the first structure of the immature form of HIV at a high enough resolution to pinpoint exactly where each building block sits in the virus. The study, published online today in Nature, reveals that the building blocks of the immature form of HIV are arranged in a surprising way.
“The structure is definitely different from what we’d expected,” says John Briggs from EMBL, who led the work. “We assumed that retroviruses like HIV and Mason-Pfizer Monkey Virus would have similar structures, because they use such similar building blocks, but it turns out that their immature forms are surprisingly different from each other. At this point, we don’t really know why.”
Briggs and colleagues used cryo-electron microscopy to study the protein lattice that surrounds the virus’ genetic material. After infecting one of the cells in our immune system, HIV replicates, producing more copies of itself, each of which has to be assembled from a medley of viral and cellular components into an immature virus. This is the form that leaves the cell. The protein building blocks that make up the virus are then rearranged into the virus’ mature form, which can infect other cells.
The first cryo-electron microscopy images of immature HIV, obtained at EMBL in the 1990s, surprised researchers by showing that the virus did not have a regular symmetrical structure, as had been assumed. That meant it was going to be difficult to get a detailed picture of the structure of its protein lattice. Two decades on, by optimising both how data is collected at the microscope and how it is analysed, Florian Schur, a PhD student in Briggs’ lab, has now achieved an unprecedentedly detailed structure.
With this structure in hand, scientists have a basis to probe further. They can use it to decide where to focus efforts for achieving the even greater detail needed to explore potential drug targets, for instance. It will also enable researchers to understand how mutations might influence how the virus assembles. And the techniques themselves can be applied to a variety of questions.
“This approach offers so many possibilities,” says Schur. “You can look at other viruses, of course, but also at complexes and proteins inside cells, with a whole new level of detail.”
In future, the EMBL scientists will use the approach to look at other viruses and at the vesicles that transport material inside cells. They also aim to push the techniques even further, to allow them to see other parts of the viral proteins that are currently beyond their reach, but which they suspect play an important role in HIV maturation.
“In the long term, we’d also like to investigate how drugs which are known to inhibit virus assembly and maturation actually work,” Briggs concludes.
The study was conducted by the EMBL scientists together with their collaborators Barbara Müller and Hans-Georg Kräusslich at the University Clinic Heidelberg, in the joint Molecular Medicine Partnership Unit.
Video: Take a tour of the structure
Schur, F.K.M., Hagen, W.J.H., Rumlová, M., Ruml, T., Müller, B., Kräusslich, H. & Briggs, J.AG. The structure of the immature HIV-1 capsid in intact virus particles at 8.8 Å resolution. Published online in Nature, 2 November 2014. DOI: 10.1038/nature13838.
Assembly of infectious HIV-1 proceeds in two stages. Firstly the viral Gag polyprotein assembles into a hexameric protein lattice at the plasma membrane of the infected cell, inducing budding and release of an immature particle. Secondly Gag is cleaved by the viral protease, leading to internal rearrangement of the virus into the mature, infectious form. Both immature and mature HIV-1 particles are heterogeneous in size and morphology, preventing high-resolution analysis of the viral protein arrangement in situ by conventional structural biology methods. Here we have applied cryo-electron tomography and sub-tomogram averaging methods to resolve the structure of the capsid lattice within intact immature HIV-1 particles at 8.8 Å resolution, allowing unambiguous positioning of all alpha helices. The resulting pseudo-atomic model reveals important structural features and interactions mediating HIV-1 assembly. Strikingly, these interactions differ from those predicted by the most complete structural models based on in vitro assembled arrays of Gag- derived proteins from the betaretrovirus Mason-Pfizer monkey virus (M- PMV). To validate this difference, we have also solved the structure of the capsid lattice within intact immature M-PMV particles. Comparison with the immature HIV-1 structure revealed that retroviral capsid proteins, while having conserved tertiary structures, adopt different quaternary arrangements during virus assembly. The approach demonstrated here should be applicable to determine structures of other proteins at sub- nanometer resolution within heterogeneous environments.
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