<s>
Treefinder	B-Application
is	O
a	O
computer	O
program	O
for	O
the	O
likelihood-based	O
reconstruction	O
of	O
phylogenetic	O
trees	O
from	O
molecular	O
sequences	O
.	O
</s>
<s>
Treefinder	B-Application
is	O
free	O
of	O
charge	O
,	O
though	O
the	O
most	O
recent	O
license	O
prohibits	O
its	O
use	O
in	O
the	O
USA	O
and	O
eight	O
European	O
countries	O
.	O
</s>
<s>
Treefinder	B-Application
is	O
scriptable	O
through	O
a	O
proprietary	O
scripting	B-Language
language	I-Language
called	O
TL	O
.	O
</s>
<s>
Treefinder	B-Application
has	O
an	O
efficient	O
tree	B-Algorithm
search	I-Algorithm
algorithm	I-Algorithm
that	O
can	O
infer	O
trees	O
with	O
thousands	O
of	O
species	O
within	O
a	O
short	O
time	O
.	O
</s>
<s>
Treefinder	B-Application
also	O
supports	O
exporting	O
results	O
as	O
NEWICK	B-Data_Structure
or	O
NEXUS	O
files	O
.	O
</s>
<s>
One	O
can	O
assume	O
different	O
models	O
for	O
different	O
partitions	O
of	O
a	O
sequence	B-Algorithm
alignment	I-Algorithm
,	O
and	O
partitions	O
may	O
be	O
assumed	O
to	O
evolve	O
at	O
different	O
speeds	O
.	O
</s>
<s>
Treefinder	B-Application
's	O
original	O
publication	O
from	O
2004	O
has	O
been	O
cited	O
more	O
than	O
a	O
thousand	O
times	O
in	O
the	O
scientific	O
literature	O
.	O
</s>
<s>
On	O
February	O
1	O
,	O
2015	O
,	O
Jobb	O
disallowed	O
the	O
use	O
of	O
Treefinder	B-Application
in	O
the	O
USA	O
in	O
order	O
to	O
make	O
a	O
political	O
statement	O
.	O
</s>
