<s>
MBN	B-Application
Explorer	I-Application
(	O
MesoBioNano	O
Explorer	O
)	O
is	O
a	O
software	O
package	O
for	O
molecular	O
dynamics	O
simulations	O
,	O
structure	O
optimization	O
and	O
kinetic	O
Monte	O
Carlo	O
simulations	O
.	O
</s>
<s>
It	O
is	O
designed	O
for	O
multiscale	B-Algorithm
computational	I-Algorithm
analysis	I-Algorithm
of	O
structure	O
and	O
dynamics	O
of	O
atomic	O
clusters	O
and	O
nanoparticles	O
,	O
biomolecules	O
and	O
nanosystems	O
,	O
nanostructured	O
materials	O
,	O
different	O
states	O
of	O
matter	O
and	O
various	O
interfaces	O
.	O
</s>
<s>
MBN	B-Application
Explorer	I-Application
inherited	O
the	O
experience	O
obtained	O
on	O
the	O
development	O
of	O
the	O
software	O
package	O
Cluster	O
Searcher	O
.	O
</s>
<s>
The	O
first	O
version	O
of	O
MBN	B-Application
Explorer	I-Application
was	O
released	O
in	O
2012	O
as	O
a	O
multipurpose	O
computer	O
code	O
allowing	O
to	O
model	O
different	O
molecular	O
systems	O
of	O
varied	O
level	O
of	O
complexity	O
.	O
</s>
<s>
MBN	B-Application
Explorer	I-Application
allows	O
for	O
the	O
multiscale	O
description	O
of	O
molecular	O
systems	O
by	O
means	O
of	O
kinetic	O
Monte	O
Carlo	O
approach	O
and	O
the	O
irradiation-driven	O
molecular	O
dynamics	O
.	O
</s>
<s>
MBN	B-Application
Explorer	I-Application
supports	O
several	O
standard	O
atomic	O
trajectory	O
formats	O
,	O
such	O
as	O
XYZ	O
(	O
text	O
format	O
)	O
,	O
DCD	O
(	O
binary	O
format	O
)	O
and	O
DCD+XYZ	O
(	O
hybrid	O
format	O
)	O
.	O
</s>
<s>
MBN	B-Application
Explorer	I-Application
is	O
complemented	O
with	O
MBN	O
Studio	O
-	O
a	O
multi-task	O
program	O
for	O
molecular	O
modeling	O
and	O
design	O
,	O
as	O
well	O
as	O
for	O
visualization	O
and	O
analysis	O
of	O
results	O
of	O
the	O
simulations	O
performed	O
with	O
MBN	B-Application
Explorer	I-Application
.	O
</s>
<s>
MBN	B-Application
Explorer	I-Application
has	O
been	O
utilized	O
in	O
different	O
research	O
projects	O
in	O
the	O
fields	O
of	O
materials	O
science	O
,	O
nanotechnology	O
and	O
radiation	O
damage	O
:	O
</s>
