<s>
This	O
list	B-Application
of	I-Application
phylogenetics	I-Application
software	I-Application
is	O
a	O
compilation	O
of	O
computational	B-Application
phylogenetics	I-Application
software	I-Application
used	O
to	O
produce	O
phylogenetic	O
trees	O
.	O
</s>
<s>
Methods	O
for	O
estimating	O
phylogenies	O
include	O
neighbor-joining	B-Algorithm
,	O
maximum	O
parsimony	O
(	O
also	O
simply	O
referred	O
to	O
as	O
parsimony	O
)	O
,	O
UPGMA	B-Algorithm
,	O
Bayesian	B-General_Concept
phylogenetic	I-General_Concept
inference	I-General_Concept
,	O
maximum	O
likelihood	O
and	O
distance	O
matrix	O
methods	O
.	O
</s>
<s>
Name	O
Description	O
Methods	O
Author	O
ADMIXTOOLS	B-Application
R	B-Language
software	O
package	O
that	O
contains	O
the	O
qpGraph	O
,	O
qpAdm	O
,	O
qpWave	O
,	O
and	O
qpDstat	O
programs	O
Nick	O
Patterson	O
and	O
David	O
ReichAncesTreeAn	O
algorithm	O
for	O
clonal	O
tree	O
reconstruction	O
from	O
multi-sample	O
cancer	O
sequencing	O
data.Maximum	O
Likelihood	O
,	O
Integer	O
Linear	O
Programming	O
(	O
ILP	O
)	O
M	O
.	O
El-Kebir	O
,	O
L	O
.	O
Oesper	O
,	O
H	O
.	O
Acheson-Field	O
,	O
and	O
B	O
.	O
J	O
.	O
Raphael	O
AliGROOVE	O
Visualisation	O
of	O
heterogeneous	O
sequence	O
divergence	O
within	O
multiple	O
sequence	O
alignments	O
and	O
detection	O
of	O
inflated	O
branch	O
support	O
Identification	O
of	O
single	O
taxa	O
which	O
show	O
predominately	O
randomized	O
sequence	O
similarity	O
in	O
comparison	O
with	O
other	O
taxa	O
in	O
a	O
multiple	O
sequence	O
alignment	O
and	O
evaluation	O
of	O
the	O
reliability	O
of	O
node	O
support	O
in	O
a	O
given	O
topology	O
Patrick	O
Kück	O
,	O
Sandra	O
A	O
Meid	O
,	O
Christian	O
Groß	O
,	O
Bernhard	O
Misof	O
,	O
Johann	O
Wolfgang	O
Wägele	O
.	O
</s>
<s>
ape	O
R-Project	B-Language
package	O
for	O
analysis	O
of	O
phylogenetics	O
and	O
evolutionProvides	O
a	O
large	O
variety	O
of	O
phylogenetics	O
functionsMaintainer	O
:	O
Emmanuel	O
Paradis	O
Armadillo	O
Workflow	O
Platform	O
Workflow	O
platform	O
dedicated	O
to	O
phylogenetic	O
and	O
general	O
bioinformatic	O
analysis	O
Inference	O
of	O
phylogenetic	O
trees	O
using	O
Distance	O
,	O
Maximum	O
Likelihood	O
,	O
Maximum	O
Parsimony	O
,	O
Bayesian	O
methods	O
and	O
related	O
workflows	O
.	O
</s>
<s>
Diallo	O
and	O
V	O
.	O
Makarenkov	O
BAli-Phy	B-Application
Simultaneous	O
Bayesian	O
inference	O
of	O
alignment	O
and	O
phylogeny	O
Bayesian	O
inference	O
,	O
alignment	O
as	O
well	O
as	O
tree	O
search	O
.	O
</s>
<s>
Suchard	O
,	O
B	O
.	O
D	O
.	O
Redelings	O
BATWING	O
Bayesian	O
Analysis	O
of	O
Trees	O
With	O
Internal	O
Node	O
Generation	O
Bayesian	O
inference	O
,	O
demographic	O
history	O
,	O
population	O
splits	O
I	O
.	O
J	O
.	O
Wilson	O
,	O
Weale	O
,	O
D.Balding	O
BayesPhylogenies	O
Bayesian	O
inference	O
of	O
trees	O
using	O
Markov	B-General_Concept
chain	I-General_Concept
Monte	I-General_Concept
Carlo	I-General_Concept
methods	I-General_Concept
Bayesian	O
inference	O
,	O
multiple	O
models	O
,	O
mixture	O
model	O
(	O
auto-partitioning	O
)	O
M	O
.	O
Pagel	O
,	O
A	O
.	O
Meade	O
BayesTraits	O
Analyses	O
trait	O
evolution	O
among	O
groups	O
of	O
species	O
for	O
which	O
a	O
phylogeny	O
or	O
sample	O
of	O
phylogenies	O
is	O
available	O
Trait	O
analysis	O
M	O
.	O
Pagel	O
,	O
A	O
.	O
Meade	O
BEAST	O
Bayesian	O
Evolutionary	O
Analysis	O
Sampling	O
Trees	O
Bayesian	O
inference	O
,	O
relaxed	O
molecular	O
clock	O
,	O
demographic	O
history	O
A	O
.	O
J	O
.	O
Drummond	O
,	O
M	O
.	O
A	O
.	O
Suchard	O
,	O
D	O
Xie	O
&	O
A	O
.	O
Rambaut	O
BioNumerics	B-Application
Universal	O
platform	O
for	O
the	O
management	O
,	O
storage	O
and	O
analysis	O
of	O
all	O
types	O
of	O
biological	O
data	O
,	O
including	O
tree	O
and	O
network	O
inference	O
of	O
sequence	O
data.Neighbor-joining	O
,	O
maximum	O
parsimony	O
,	O
UPGMA	B-Algorithm
,	O
maximum	O
likelihood	O
,	O
distance	O
matrix	O
methods	O
,...	O
</s>
<s>
Bosque	O
Integrated	O
graphical	O
software	O
to	O
perform	O
phylogenetic	O
analyses	O
,	O
from	O
the	O
importing	O
of	O
sequences	O
to	O
the	O
plotting	O
and	O
graphical	O
edition	O
of	O
trees	O
and	O
alignments	O
Distance	O
and	O
maximum	O
likelihood	O
methods	O
(	O
through	O
phyml	O
,	O
phylip	B-Application
&	O
tree-puzzle	B-Application
)	O
S	O
.	O
Ramirez	O
,	O
E	O
.	O
Rodriguez.BUCKy	O
Bayesian	O
concordance	O
of	O
gene	O
trees	O
Bayesian	O
concordance	O
using	O
modified	O
greedy	O
consensus	O
of	O
unrooted	O
quartets	O
C	O
.	O
Ané	O
,	O
B	O
.	O
Larget	O
,	O
D.A.	O
</s>
<s>
Dewey	O
,	O
C	O
.	O
AnéCanopyAssessing	O
intratumor	O
heterogeneity	O
and	O
tracking	O
longitudinal	O
and	O
spatial	O
clonal	O
evolutionary	O
history	O
by	O
next-generation	O
sequencingMaximum	O
Likelihood	O
,	O
Markov	B-General_Concept
Chain	I-General_Concept
Monte	I-General_Concept
Carlo	I-General_Concept
(	O
MCMC	O
)	O
methodsY	O
.	O
</s>
<s>
Jiang	O
,	O
Y	O
.	O
Qiu	O
,	O
A	O
.	O
J	O
.	O
Minn	O
,	O
and	O
N	O
.	O
R	B-Language
.	O
ZhangCITUPClonality	O
Inference	O
in	O
Tumors	O
Using	O
PhylogenyExhaustive	O
search	O
,	O
Quadratic	O
Integer	O
Programming	O
(	O
QIP	O
)	O
S	O
.	O
Malikic	O
,	O
A.W.	O
</s>
<s>
Sahinalp	O
ClustalW	B-Application
Progressive	O
multiple	O
sequence	O
alignment	O
Distance	O
matrix/nearest	O
neighbor	O
Thompson	O
et	O
al	O
.	O
</s>
<s>
Dendroscope	B-Application
Tool	O
for	O
visualizing	O
rooted	O
trees	O
and	O
calculating	O
rooted	O
networks	O
Rooted	O
trees	O
,	O
tanglegrams	O
,	O
consensus	O
networks	O
,	O
hybridization	O
networks	O
Daniel	O
Huson	O
et	O
al	O
.	O
</s>
<s>
Neighbor	B-Algorithm
Joining	I-Algorithm
Jeon	O
,	O
Y.S.	O
</s>
<s>
Arkin	O
fitmodel	O
Fits	O
branch-site	O
codon	O
models	O
without	O
the	O
need	O
of	O
prior	O
knowledge	O
of	O
clades	O
undergoing	O
positive	O
selection	O
Maximum	O
likelihood	O
S	O
.	O
Guindon	O
Geneious	O
Geneious	O
provides	O
genome	O
and	O
proteome	O
research	O
tools	O
Neighbor-joining	B-Algorithm
,	O
UPGMA	B-Algorithm
,	O
MrBayes	O
plugin	O
,	O
PHYML	O
plugin	O
,	O
RAxML	O
plugin	O
,	O
FastTree	O
plugin	O
,	O
GARLi	O
plugin	O
,	O
PAUP*	B-Application
Plugin	O
A	O
.	O
J	O
.	O
Drummond	O
,	O
M.Suchard	O
,	O
V.Lefort	O
et	O
al	O
.	O
</s>
<s>
Genozip	O
Genozip	O
is	O
a	O
compressor	O
of	O
FASTA	O
and	O
PHYLIP	B-Application
files	O
(	O
as	O
well	O
as	O
FASTQ	O
,	O
BAM	O
,	O
VCF	O
etc	O
)	O
,	O
and	O
it	O
can	O
also	O
convert	O
MultiFASTA	O
to	O
PHYLIP	B-Application
and	O
vice	O
versa	O
.	O
</s>
<s>
HyPhy	B-Application
Hypothesis	O
testing	O
using	O
phylogenies	O
Maximum	O
likelihood	O
,	O
neighbor-joining	B-Algorithm
,	O
clustering	O
techniques	O
,	O
distance	O
matrices	O
S.L.	O
</s>
<s>
Muse	O
IQPNNI	O
Iterative	O
ML	O
treesearch	O
with	O
stopping	O
rule	O
Maximum	O
likelihood	O
,	O
neighbor-joining	B-Algorithm
L.S.	O
</s>
<s>
Minh	O
IQ-TREE	O
An	O
efficient	O
phylogenomic	O
software	O
by	O
maximum	O
likelihood	O
,	O
as	O
successor	O
of	O
IQPNNI	O
and	O
TREE-PUZZLE	B-Application
.	O
</s>
<s>
Taboada	O
,	O
R	B-Language
.	O
Doallo	O
,	O
D	O
.	O
Posada	O
JolyTree	O
An	O
alignment-free	O
bioinformatics	O
procedure	O
to	O
infer	O
distance-based	O
phylogenetic	O
trees	O
from	O
genome	O
assemblies	O
,	O
specifically	O
designed	O
to	O
quickly	O
infer	O
trees	O
from	O
genomes	O
belonging	O
to	O
the	O
same	O
genus	O
MinHash-based	O
pairwise	O
genome	O
distance	O
,	O
Balanced	O
Minimum	O
Evolution	O
(	O
BME	O
)	O
,	O
ratchet-based	O
BME	O
tree	O
search	O
,	O
Rate	O
of	O
Elementary	O
Quartets	O
A	O
.	O
Criscuolo	O
LisBeth	O
Three-item	O
analysis	O
for	O
phylogenetics	O
and	O
biogeography	O
Three-item	O
analysis	O
J	O
.	O
Ducasse	O
,	O
N	O
.	O
Cao	O
&	O
R	B-Language
.	O
Zaragüeta-Bagils	O
MEGA	B-Application
Molecular	B-Application
Evolutionary	I-Application
Genetics	I-Application
Analysis	I-Application
Distance	O
,	O
Parsimony	O
and	O
Maximum	O
Composite	O
Likelihood	O
Methods	O
Tamura	O
K	O
,	O
Dudley	O
J	O
,	O
Nei	O
M	O
&	O
Kumar	O
SMegAlign	O
ProMegAlign	O
Pro	O
is	O
part	O
of	O
DNASTAR	O
's	O
Lasergene	O
Molecular	O
Biology	O
package	O
.	O
</s>
<s>
Maximum	O
parsimony	O
,	O
distance	O
matrix	O
,	O
maximum	O
likelihood	O
Wayne	O
Maddison	O
and	O
D	O
.	O
R	B-Language
.	O
Maddison	O
MetaPIGA2	O
Maximum	O
likelihood	O
phylogeny	O
inference	O
multi-core	O
program	O
for	O
DNA	O
and	O
protein	O
sequences	O
,	O
and	O
morphological	O
data	O
.	O
</s>
<s>
Maximum	O
likelihood	O
,	O
stochastic	O
heuristics	O
(	O
genetic	B-Algorithm
algorithm	I-Algorithm
,	O
metapopulation	O
genetic	B-Algorithm
algorithm	I-Algorithm
,	O
simulated	O
annealing	O
,	O
etc	O
.	O
</s>
<s>
Michel	O
C	O
.	O
Milinkovitch	O
and	O
Raphaël	O
HelaersMicrobeTraceMicrobeTrace	O
is	O
a	O
free	O
,	O
browser-based	O
web	O
application.2D	O
and	O
3D	O
network	O
visualization	O
tool	O
,	O
Neighbor-joining	B-Algorithm
tree	O
visualization	O
,	O
Gantt	O
charts	O
,	O
bubbles	O
charts	O
,	O
networks	O
visualized	O
on	O
maps	O
,	O
flow	O
diagrams	O
,	O
aggregate	O
tables	O
,	O
epi	O
curves	O
,	O
histograms	O
,	O
alignment	O
viewer	O
,	O
and	O
much	O
more.Ellsworth	O
M	O
.	O
Campbell	O
,	O
Anthony	O
Boyles	O
,	O
Anupama	O
Shankar	O
,	O
Jay	O
Kim	O
,	O
Sergey	O
Knyazev	O
,	O
Roxana	O
Cintron	O
,	O
William	O
M	O
.	O
Switzer	O
Modelgenerator	O
Model	O
selection	O
(	O
protein	O
or	O
nucleotide	O
)	O
Maximum	O
likelihood	O
Thomas	O
Keane	O
MOLPHY	O
Molecular	O
phylogenetics	O
(	O
protein	O
or	O
nucleotide	O
)	O
Maximum	O
likelihood	O
J	O
.	O
Adachi	O
and	O
M	O
.	O
HasegawaMorphoBankWeb	O
application	O
to	O
organize	O
trait	O
data	O
(	O
morphological	O
characters	O
)	O
for	O
tree	O
buildingfor	O
use	O
with	O
Maximum	O
Parsimony	O
(	O
via	O
the	O
CIPRES	O
portal	O
)	O
,	O
Maximum	O
Likelihood	O
,	O
and	O
Bayesian	O
analysis	O
)	O
O'Leary	O
,	O
M	O
.	O
A.	O
,	O
and	O
S	O
.	O
Kaufman	O
,	O
also	O
K	O
.	O
Alphonse	O
MrBayes	O
Posterior	O
probability	O
estimation	O
Bayesian	O
inference	O
J	O
.	O
Huelsenbeck	O
,	O
et	O
al	O
.	O
</s>
<s>
Maximum	O
likelihood	O
,	O
AIC	O
,	O
AICc	O
,	O
BIC	O
R	B-Language
.	O
Lanfear	O
,	O
B	O
Calcott	O
,	O
SYW	O
Ho	O
,	O
S	O
GuindonPASTISR	O
package	O
for	O
phylogenetic	O
assemblyR	O
,	O
two‐stage	O
Bayesian	O
inference	O
using	O
MrBayes	O
3.2Thomas	O
et	O
al	O
.	O
</s>
<s>
2013	O
PAUP*	B-Application
Phylogenetic	O
analysis	O
using	O
parsimony	O
( *	O
and	O
other	O
methods	O
)	O
Maximum	O
parsimony	O
,	O
distance	O
matrix	O
,	O
maximum	O
likelihood	O
D	O
.	O
Swofford	O
phangorn	O
Phylogenetic	O
analysis	O
in	O
R	B-Language
ML	O
,	O
MP	O
,	O
distance	O
matrix	O
,	O
bootstrap	O
,	O
phylogentic	O
networks	O
,	O
bootstrap	O
,	O
model	O
selection	O
,	O
SH-test	O
,	O
SOWH-test	O
Maintainer	O
:	O
K	O
.	O
Schliep	O
Phybase	O
an	O
R	B-Language
package	O
for	O
species	O
tree	O
analysisphylogenetics	O
functions	O
,	O
STAR	O
,	O
NJst	O
,	O
STEAC	O
,	O
maxtree	O
,	O
etcL	O
.	O
</s>
<s>
Liu	O
&	O
L	O
.	O
Yu	O
phyclust	O
Phylogenetic	O
Clustering	O
(	O
Phyloclustering	O
)	O
Maximum	O
likelihood	O
of	O
Finite	O
Mixture	O
Modes	O
Wei-Chen	O
Chen	O
PHYLIP	B-Application
Phylogenetic	O
inference	O
package	O
Maximum	O
parsimony	O
,	O
distance	O
matrix	O
,	O
maximum	O
likelihood	O
J	O
.	O
Felsenstein	O
phyloT	O
Generates	O
phylogenetic	O
trees	O
in	O
various	O
formats	O
,	O
based	O
on	O
NCBI	O
taxonomy	O
none	O
I	O
.	O
Letunic	O
PhyloQuart	O
Quartet	O
implementation	O
(	O
uses	O
sequences	O
or	O
distances	O
)	O
Quartet	O
method	O
V	O
.	O
BerryPhyloWGSReconstructing	O
subclonal	O
composition	O
and	O
evolution	O
from	O
whole-genome	O
sequencing	O
of	O
tumorsMCMCA	O
.	O
</s>
<s>
Taboada	O
,	O
R	B-Language
.	O
Doallo	O
,	O
D	O
.	O
Posada	O
PyCogent	O
Software	O
library	O
for	O
genomic	O
biology	O
Simulating	O
sequences	O
,	O
alignment	O
,	O
controlling	O
third	O
party	O
applications	O
,	O
workflows	O
,	O
querying	O
databases	O
,	O
generating	O
graphics	O
and	O
phylogenetic	O
trees	O
Knight	O
et	O
al	O
.	O
</s>
<s>
QuickTree	O
Tree	O
construction	O
optimized	O
for	O
efficiency	O
Neighbor-joining	B-Algorithm
K	O
.	O
Howe	O
,	O
A	O
.	O
Bateman	O
,	O
R	B-Language
.	O
Durbin	O
RAxML-HPC	O
Randomized	O
Axelerated	O
Maximum	O
Likelihood	O
for	O
High	O
Performance	O
Computing	O
(	O
nucleotides	O
and	O
aminoacids	O
)	O
Maximum	O
likelihood	O
,	O
simple	O
Maximum	O
parsimony	O
A	O
.	O
Stamatakis	O
RAxML-NG	O
Randomized	O
Axelerated	O
Maximum	O
Likelihood	O
for	O
High	O
Performance	O
Computing	O
(	O
nucleotides	O
and	O
aminoacids	O
)	O
Next	O
Generation	O
Maximum	O
likelihood	O
,	O
simple	O
Maximum	O
parsimony	O
A	O
.	O
Kozlov	O
,	O
D	O
.	O
Darriba	O
,	O
T	O
.	O
Flouri	O
,	O
B	O
.	O
Morel	O
,	O
A	O
.	O
Stamatakis	O
SEMPHY	O
Tree	O
reconstruction	O
using	O
the	O
combined	O
strengths	O
of	O
maximum-likelihood	O
(	O
accuracy	O
)	O
and	O
neighbor-joining	B-Algorithm
(	O
speed	O
)	O
.	O
</s>
<s>
A	O
hybrid	O
maximum-likelihood	O
/	O
neighbor-joining	B-Algorithm
method	O
M	O
.	O
Ninio	O
,	O
E	O
.	O
Privman	O
,	O
T	O
.	O
Pupko	O
,	O
N	O
.	O
Friedman	O
SimPlot++	O
Sequence	O
similarity	O
plots	O
(	O
SimPlots	O
)	O
,	O
detection	O
of	O
intragenic	O
and	O
intergenic	O
recombination	O
events	O
,	O
bootscan	O
analysis	O
and	O
sequence	O
similarity	O
networks	O
.	O
</s>
<s>
SimPlot	O
using	O
different	O
nucleotide/protein	O
distance	O
models	O
;	O
Phi	O
,	O
χ2	O
and	O
NSS	O
recombination	O
tests	O
;	O
Sequence	O
similarity	O
network	O
analysis	O
S	O
.	O
Samson	O
,	O
E	O
.	O
Lord	O
,	O
V	O
.	O
Makarenkov	O
sowhat	O
Hypothesis	O
testing	O
SOWH	O
test	O
Church	O
,	O
Ryan	O
,	O
and	O
Dunn	O
SplitsTree	B-Application
Tree	O
and	O
network	O
program	O
Computation	O
,	O
visualization	O
and	O
exploration	O
of	O
phylogenetic	O
trees	O
and	O
networks	O
D.H.	O
Huson	O
and	O
D	O
.	O
Bryant	O
TNT	O
Phylogenetic	O
inference	O
Parsimony	O
,	O
weighting	O
,	O
ratchet	O
,	O
tree	O
drift	O
,	O
tree	O
fusing	O
,	O
sectorial	O
searches	O
P	O
.	O
Goloboff	O
et	O
al	O
.	O
</s>
<s>
TreeGen	O
Tree	O
construction	O
given	O
precomputed	O
distance	O
data	O
Distance	O
matrix	O
ETH	O
Zurich	O
TreeAlign	O
Efficient	O
hybrid	O
method	O
Distance	O
matrix	O
and	O
approximate	O
parsimony	O
J	O
.	O
Hein	O
TreeLine	O
Tree	O
construction	O
algorithm	O
within	O
the	O
DECIPHER	B-Application
package	O
for	O
R	B-Language
Maximum	O
likelihood	O
,	O
maximum	O
parsimony	O
,	O
and	O
distance	O
E	O
.	O
Wright	O
Treefinder	B-Application
Fast	O
ML	O
tree	O
reconstruction	O
,	O
bootstrap	O
analysis	O
,	O
model	O
selection	O
,	O
hypothesis	O
testing	O
,	O
tree	O
calibration	O
,	O
tree	O
manipulation	O
and	O
visualization	O
,	O
computation	O
of	O
sitewise	O
rates	O
,	O
sequence	O
simulation	O
,	O
many	O
models	O
of	O
evolution	O
(	O
DNA	O
,	O
protein	O
,	O
rRNA	O
,	O
mixed	O
protein	O
,	O
user-definable	O
)	O
,	O
GUI	O
and	O
scripting	O
language	O
Maximum	O
likelihood	O
,	O
distances	O
,	O
and	O
others	O
Jobb	O
G	O
,	O
von	O
Haeseler	O
A	O
,	O
Strimmer	O
K	O
TREE-PUZZLE	B-Application
Maximum	O
likelihood	O
and	O
statistical	O
analysis	O
Maximum	O
likelihood	O
Makarenkov	O
T-REX	B-Application
(	O
Webserver	O
)	O
Tree	O
inference	O
and	O
visualization	O
,	O
Horizontal	O
gene	O
transfer	O
detection	O
,	O
multiple	O
sequence	O
alignment	O
Distance	O
(	O
neighbor	B-Algorithm
joining	I-Algorithm
)	O
,	O
Parsimony	O
and	O
Maximum	O
likelihood	O
(	O
PhyML	O
,	O
RAxML	O
)	O
tree	O
inference	O
,	O
MUSCLE	O
,	O
MAFFT	O
and	O
ClustalW	B-Application
sequence	O
alignments	O
and	O
related	O
applications	O
Boc	O
A	O
,	O
Diallo	O
AB	O
,	O
Makarenkov	O
V	O
UShER	O
Phylogenetic	O
placement	O
using	O
maximum	O
parsimony	O
for	O
viral	O
genomes	O
Maximum	O
parsimony	O
Turakhia	O
Y	O
,	O
Thornlow	O
B	O
,	O
Hinrichs	O
AS	O
,	O
De	O
Maio	O
N	O
,	O
Gozashti	O
L	O
,	O
Lanfear	O
R	B-Language
,	O
Haussler	O
D	O
and	O
Corbett-Detig	O
R	B-Language
UGENE	B-Language
Fast	O
and	O
free	O
multiplatform	O
tree	O
editor	O
GUI	O
with	O
Phylip	B-Application
3.6	O
and	O
IQTree	O
algorithms	O
UniproVeryFastTreeA	O
highly-tuned	O
tool	O
that	O
takes	O
advantage	O
of	O
parallelization	O
and	O
vectorization	O
strategies	O
to	O
speed	O
up	O
the	O
inference	O
of	O
phylogenies	O
for	O
huge	O
alignments	O
.	O
</s>
