<s>
Functional	O
connectivity	O
software	O
is	O
used	O
to	O
study	O
functional	O
properties	O
of	O
the	O
connectome	O
using	O
functional	B-Algorithm
Magnetic	I-Algorithm
Resonance	I-Algorithm
Imaging	I-Algorithm
(	O
fMRI	B-Algorithm
)	O
data	O
in	O
the	O
resting	B-Algorithm
state	I-Algorithm
and	O
during	O
tasks	O
.	O
</s>
<s>
To	O
access	O
many	O
of	O
these	O
software	O
applications	O
visit	O
the	O
NIH	O
funded	O
Neuroimaging	B-Algorithm
Informatics	O
Tools	O
and	O
Resources	O
Clearinghouse	O
(	O
NITRC	O
)	O
site	O
.	O
</s>
<s>
Name	O
Description	O
Programming	O
language	O
Is	O
part	O
of	O
/	O
requires	O
Developer/Organization	O
Brain	O
Connectivity	O
Toolbox	O
Graph-theoretical	O
analyses	O
of	O
functional	O
connectivity	O
Matlab	B-Language
Department	O
of	O
Psychological	O
and	O
Brain	O
Sciences	O
,	O
Indiana	O
UniversityBrain	O
Modulyzer	O
Explore	O
Hierarchical	O
Processes	O
of	O
the	O
functional	O
brain	O
networksPython	O
U.S.	O
Dept	O
.	O
</s>
<s>
of	O
Energy	O
,	O
Lawrence	O
Berkeley	O
National	O
Laboratory	O
BrainNet	O
viewer	O
Brain	O
network	O
visualization	O
tool	O
Matlab	B-Language
National	O
Key	O
Laboratory	O
of	O
Cognitive	O
Neuroscience	O
and	O
Learning	O
,	O
Beijing	O
Normal	O
University	O
Brainwaver	O
Brain	O
connectivity	O
extraction	O
and	O
analysis	O
Rwaveslim	O
Centre	O
National	O
de	O
la	O
Recherche	O
Scientifique	O
,	O
,	O
University	O
of	O
Cambridge	O
BRAPH	O
BRAPH	O
:	O
BRain	O
Analysis	O
using	O
graPH	O
theory	O
Matlab	B-Language
Soft	O
Matter	O
Lab	O
,	O
University	O
of	O
Gothenburg	O
;	O
Department	O
of	O
Neurobiology	O
,	O
Care	O
Sciences	O
and	O
Society	O
(	O
NVS	O
)	O
,	O
Karolinska	O
Institute	O
C-PAC	O
Functional	O
connectivity	O
analysis	O
pipeline	O
Python	B-Language
Child	O
Mind	O
Institute	O
;	O
Nathan	O
Kline	O
Institute	O
;	O
NYU	O
Langone	O
Medical	O
Center	O
CONN	B-Algorithm
Functional	O
connectivity	O
analysis	O
and	O
display	O
tool	O
Matlab	B-Language
SPM	O
McGovern	O
Institute	O
for	O
Brain	O
Research	O
,	O
Massachusetts	O
Institute	O
of	O
Technology	O
:	O
MIT	O
Connectome	O
workbench	O
Visualization	O
and	O
discovery	O
tool	O
Python	B-Language
Child	O
Mind	O
Institute	O
,	O
Nathan	O
Kline	O
Institute	O
,	O
NYU	O
Langone	O
Medical	O
Center	O
cPPI	O
Task-related	O
functional	O
connectivity	O
analysis	O
Matlab	B-Language
SPM	O
Monash	O
Clinical	O
and	O
Imaging	O
Neuroscience	O
DCM	B-Algorithm
Dynamic	B-Algorithm
Causal	I-Algorithm
Modelling	I-Algorithm
analysis	O
Matlab	B-Language
SPM	O
Wellcome	O
Trust	O
Centre	O
for	O
Neuroimaging	B-Algorithm
,	O
University	O
College	O
London	O
FATCAT	O
Functional	O
and	O
tractographic	O
connectivity	O
analysis	O
C	B-Language
AFNI	O
Scientific	O
and	O
Statistical	O
Computing	O
Core	O
,	O
National	O
Institute	O
of	O
Mental	O
Health	O
:	O
NIMH	O
FSFC	B-Algorithm
Seed-based	O
functional	O
connectivity	O
analysis	O
Shell	B-Language
FreeSurfer	B-Algorithm
Martinos	O
Center	O
for	O
Biomedical	O
Imaging	O
Fubraconnexvan	O
Dixhoorn	O
,	O
A.F.	O
,	O
Vissers	O
,	O
B.	O
,	O
Ferrarini	O
,	O
L.	O
,	O
Milles	O
,	O
J.	O
,	O
and	O
Botha	O
,	O
C.P.	O
</s>
<s>
Visual	O
analysis	O
of	O
integrated	O
resting	B-Algorithm
state	I-Algorithm
functional	O
brain	O
connectivity	O
and	O
anatomy	O
,	O
Eurographics	O
Workshop	O
on	O
Visual	O
Computing	O
for	O
Biology	O
and	O
Medicine	O
Tool	O
for	O
visual	O
analysis	O
of	O
functional	O
connectivity	O
C	B-Language
Delft	O
University	O
of	O
Technology	O
GIFTCalhoun	O
,	O
V	O
.	O
D.	O
,	O
Adali	O
,	O
T.	O
,	O
Pearlson	O
,	O
G	O
.	O
D	O
.	O
&	O
Pekar	O
,	O
J	O
.	O
J	O
.	O
</s>
<s>
A	O
method	O
for	O
making	O
group	O
inferences	O
from	O
functional	B-Algorithm
MRI	I-Algorithm
data	O
using	O
independent	O
component	O
analysis	O
.	O
</s>
<s>
14	O
,	O
140	O
–	O
151	O
Independent	O
component	O
analysis	O
Matlab	B-Language
Medical	O
Image	O
Analysis	O
Lab	O
,	O
The	O
Mind	O
Research	O
Network	O
gPPIMcLaren	O
,	O
D.G.	O
,	O
Ries	O
,	O
M.L.	O
,	O
Xu	O
,	O
G.	O
,	O
Johnson	O
,	O
S.C.	O
(	O
2012	O
)	O
.	O
</s>
<s>
A	O
generalized	O
form	O
of	O
context-dependent	O
psychophysiological	O
interactions	O
(	O
gPPI	O
)	O
:	O
A	O
comparison	O
to	O
standard	O
approaches	O
,	O
NeuroImage	O
,	O
61(4 )	O
,	O
1277-1286	O
Task-related	O
functional	O
connectivity	O
analysis	O
Matlab	B-Language
SPM	O
University	O
of	O
Wisconsin	O
MadisonGraph	O
Theoretic	O
GLM	O
ToolboxGraph	O
theory	O
analysis	O
and	O
fMRI	B-Algorithm
preprocessing	O
pipelineMatlab	O
Boston	O
University	O
School	O
of	O
Medicine	O
,	O
VA	O
Boston	O
Healthcare	O
System	O
Graphvar	O
Graph-theoretical	O
analysis	O
tool	O
Matlab	B-Language
Division	O
of	O
Mind	O
and	O
Brain	O
Research	O
,	O
Charité	O
Universitätsmedizin	O
MELODIC	B-Algorithm
Independent	O
component	O
analysis	O
C	B-Language
FSL	B-Algorithm
Functional	B-Algorithm
Magnetic	I-Algorithm
Resonance	I-Algorithm
Imaging	I-Algorithm
of	O
the	O
Brain	O
Analysis	O
Group	O
,	O
Oxford	O
University	O
NIAK	O
Neuroimaging	B-Algorithm
analysis	O
library	O
Matlab	B-Language
,	O
Octave	B-Language
Research	O
Centre	O
of	O
the	O
Montreal	O
Geriatric	O
Institute	O
,	O
University	O
of	O
Montreal	O
nilearnAbraham	O
,	O
A.	O
,	O
Pedregosa	O
,	O
F.	O
,	O
Eickenberg	O
,	O
M.	O
,	O
Gervais	O
,	O
P.	O
,	O
Mueller	O
,	O
A.	O
,	O
Kossaifi	O
,	O
J.	O
,	O
...	O
&	O
Varoquaux	O
,	O
G	O
.	O
(	O
2014	O
)	O
.	O
</s>
<s>
Machine	O
learning	O
for	O
neuroimaging	B-Algorithm
with	O
scikit-learn	O
.	O
</s>
