<s>
LabKey	B-Application
Server	I-Application
is	O
a	O
software	O
suite	O
available	O
for	O
scientists	O
to	O
integrate	B-General_Concept
,	O
analyze	B-General_Concept
,	O
and	O
share	B-Application
biomedical	O
research	O
data	O
.	O
</s>
<s>
The	O
platform	O
provides	O
a	O
secure	O
data	B-Protocol
repository	I-Protocol
that	O
allows	O
web-based	O
querying	O
,	O
reporting	O
,	O
and	O
collaborating	O
across	O
a	O
range	O
of	O
data	O
sources	O
.	O
</s>
<s>
Specific	O
scientific	O
applications	O
and	O
workflows	O
can	O
be	O
added	O
on	O
top	O
of	O
the	O
basic	O
platform	O
and	O
leverage	O
a	O
data	O
processing	O
pipeline	B-General_Concept
.	O
</s>
<s>
LabKey	O
licenses	O
LabKey	B-Application
Server	I-Application
and	O
its	O
documentation	O
for	O
free	O
under	O
the	O
Apache	B-Application
License	I-Application
.	O
</s>
<s>
The	O
base	O
platform	O
is	O
written	O
in	O
Java	B-Language
.	O
</s>
<s>
It	O
can	O
be	O
extended	O
through	O
the	O
addition	O
of	O
Java-based	O
modules	O
or	O
simple	O
,	O
file-based	O
modules	O
written	O
in	O
HTML	B-Language
,	O
XML	B-Protocol
and	O
JavaScript	B-Language
.	O
</s>
<s>
The	O
platform	O
can	O
also	O
be	O
extended	O
using	O
LabKey	B-Application
Server	I-Application
's	O
Java	B-Language
,	O
JavaScript	B-Language
,	O
R	B-Language
,	O
Python	B-Language
,	O
Perl	B-Language
and	O
SAS	B-Language
client	O
libraries	O
.	O
</s>
<s>
LabKey	B-Application
Server	I-Application
,	O
originally	O
known	O
as	O
the	O
Computational	O
Proteomics	O
Analysis	O
System	O
(	O
CPAS	O
)	O
,	O
was	O
developed	O
at	O
the	O
Fred	O
Hutchinson	O
Cancer	O
Research	O
Center	O
to	O
manage	O
high	O
volumes	O
of	O
data	O
generated	O
at	O
the	O
Fred	O
Hutch	O
Computational	O
Proteomics	O
Lab	O
.	O
</s>
<s>
LabKey	B-Application
Server	I-Application
provides	O
a	O
secure	O
data	B-Protocol
repository	I-Protocol
for	O
all	O
types	O
of	O
biomedical	O
data	O
,	O
including	O
mass	O
spectrometry	O
,	O
flow	O
cytometry	O
,	O
microarray	O
,	O
microplate	O
,	O
ELISpot	O
,	O
ELISA	O
,	O
NAb	O
and	O
observational	O
study	O
information	O
.	O
</s>
<s>
A	O
customizable	O
data	O
processing	O
pipeline	B-General_Concept
allows	O
the	O
upload	O
and	O
processing	O
of	O
the	O
large	O
data	O
files	O
common	O
in	O
biomedical	O
research	O
.	O
</s>
<s>
Tandem	O
search	O
engine	O
,	O
the	O
Trans-Proteomic	B-Application
Pipeline	I-Application
,	O
Mascot	B-Application
and	O
Sequest	B-Application
.	O
</s>
<s>
Supports	O
automated	O
quality	O
control	O
,	O
centralized	O
data	O
management	O
and	O
web-based	O
data	B-Application
sharing	I-Application
.	O
</s>
<s>
Integrates	O
with	O
FlowJo	B-Application
.	O
</s>
<s>
In	O
2016	O
,	O
LabKey	O
and	O
Professor	O
Dave	O
O'Connor	O
of	O
the	O
University	O
of	O
Wisconsin	O
–	O
Madison	O
launched	O
the	O
Zika	O
Open	O
Research	O
Portal	O
using	O
LabKey	B-Application
Server	I-Application
.	O
</s>
<s>
The	O
portal	O
received	O
attention	O
from	O
the	O
scientific	O
community	O
for	O
being	O
the	O
first	O
platform	O
of	O
its	O
kind	O
to	O
share	B-Application
real-time	O
research	O
data	O
.	O
</s>
