<s>
The	O
Human	B-Operating_System
Proteome	I-Operating_System
Folding	I-Operating_System
Project	I-Operating_System
(	O
HPF	O
)	O
is	O
a	O
collaborative	O
effort	O
between	O
New	O
York	O
University	O
(	O
Bonneau	O
Lab	O
)	O
,	O
the	O
Institute	O
for	O
Systems	O
Biology	O
(	O
ISB	O
)	O
and	O
the	O
University	O
of	O
Washington	O
(	O
Baker	O
Lab	O
)	O
,	O
using	O
the	O
Rosetta	B-Operating_System
software	O
developed	O
by	O
the	O
Rosetta	B-Operating_System
Commons	O
.	O
</s>
<s>
HPF	O
Phase	O
1	O
applied	O
Rosetta	B-Operating_System
v4.2x	O
software	O
on	O
the	O
human	O
genome	O
and	O
89	O
others	O
,	O
starting	O
in	O
November	O
2004	O
.	O
</s>
<s>
HPF	O
Phase	O
2	O
(	O
HPF2	O
)	O
applies	O
the	O
Rosetta	B-Operating_System
v4.8x	O
software	O
in	O
higher	O
resolution	O
,	O
"	O
full	O
atom	O
refinement	O
"	O
mode	O
,	O
concentrating	O
on	O
cancer	O
biomarkers	O
(	O
proteins	O
found	O
at	O
dramatically	O
increased	O
levels	O
in	O
cancer	O
tissues	O
)	O
,	O
human	O
secreted	O
proteins	O
and	O
malaria	O
.	O
</s>
<s>
Phase	O
1	O
ran	O
on	O
two	O
volunteer	B-Operating_System
computing	I-Operating_System
grids	O
:	O
on	O
United	B-Operating_System
Devices	I-Operating_System
 '	O
grid.org,	O
and	O
on	O
the	O
World	B-Operating_System
Community	I-Operating_System
Grid	I-Operating_System
,	O
an	O
IBM	O
philanthropic	O
initiative	O
.	O
</s>
<s>
Phase	O
2	O
of	O
the	O
project	O
ran	O
exclusively	O
on	O
the	O
World	B-Operating_System
Community	I-Operating_System
Grid	I-Operating_System
;	O
it	O
terminated	O
in	O
2013	O
after	O
more	O
than	O
9	O
years	O
of	O
IBM	O
involvement	O
.	O
</s>
