<s>
geWorkbench	B-Algorithm
(	O
genomics	O
Workbench	O
)	O
is	O
an	O
open-source	B-Application
software	I-Application
platform	O
for	O
integrated	O
genomic	O
data	O
analysis	O
.	O
</s>
<s>
It	O
is	O
a	O
desktop	O
application	O
written	O
in	O
the	O
programming	O
language	O
Java	B-Language
.	O
</s>
<s>
geWorkbench	B-Algorithm
uses	O
a	O
component	O
architecture	O
.	O
</s>
<s>
geWorkbench	B-Algorithm
is	O
the	O
Bioinformatics	O
platform	O
of	O
MAGNet	O
,	O
the	O
National	O
Center	O
for	O
the	O
Multi-scale	O
Analysis	O
of	O
Genomic	O
and	O
Cellular	O
Networks	O
,	O
one	O
of	O
the	O
8	O
National	O
Centers	O
for	O
Biomedical	O
Computing	O
funded	O
through	O
the	O
NIH	O
Roadmap	O
(	O
NIH	O
Common	O
Fund	O
)	O
.	O
</s>
<s>
Many	O
systems	O
and	O
structure	O
biology	O
tools	O
developed	O
by	O
MAGNet	O
investigators	O
are	O
available	O
as	O
geWorkbench	B-Algorithm
plugins	O
.	O
</s>
<s>
Visualization	O
of	O
gene	O
expression	O
(	O
heatmaps	O
,	O
volcano	O
plot	O
)	O
,	O
molecular	O
interaction	O
networks	O
(	O
through	O
Cytoscape	B-Language
)	O
,	O
protein	O
sequence	O
and	O
protein	O
structure	O
data	O
(	O
e.g.	O
,	O
MarkUs	O
)	O
.	O
</s>
<s>
Integration	O
with	O
3rd	O
party	O
tools	O
such	O
as	O
Genepattern	O
,	O
Cytoscape	B-Language
,	O
and	O
Genomespace	B-Application
.	O
</s>
<s>
geWorkbench	B-Algorithm
is	O
open-source	B-Application
software	I-Application
that	O
can	O
be	O
downloaded	O
and	O
installed	O
locally	O
.	O
</s>
<s>
A	O
zip	O
file	O
of	O
the	O
released	O
version	O
Java	B-Language
source	O
is	O
also	O
available	O
.	O
</s>
<s>
Prepackaged	O
installer	O
versions	O
also	O
exist	O
for	O
Windows	B-Application
,	O
Macintosh	O
,	O
and	O
Linux	B-Application
.	O
</s>
