<s>
GenomeSpace	B-Application
is	O
an	O
environment	O
for	O
genomics	O
software	O
tools	O
and	O
applications	O
.	O
</s>
<s>
GenomeSpace	B-Application
consists	O
of	O
a	O
web-based	O
user	B-Application
interface	I-Application
(	O
UI	O
)	O
for	O
users	O
,	O
and	O
both	O
a	O
representational	B-Protocol
state	I-Protocol
transfer	I-Protocol
(	O
RESTful	B-Protocol
)	O
application	B-Application
programming	I-Application
interface	I-Application
(	O
API	B-Application
)	O
and	O
a	O
Java-based	O
client	O
development	O
kit	O
(	O
CDK	O
)	O
for	O
developers	O
integrating	O
their	O
applications	O
with	O
GenomeSpace	B-Application
.	O
</s>
<s>
GenomeSpace	B-Application
is	O
linked	O
with	O
several	O
tools	O
and	O
data	O
sources	O
for	O
genomics	O
analysis	O
:	O
Cytoscape	B-Language
,	O
Galaxy	B-Application
,	O
GenePattern	O
,	O
Genomica	O
,	O
geWorkbench	B-Algorithm
,	O
InSilico	O
DB	O
,	O
the	O
Integrative	O
Genomics	O
Viewer	O
(	O
IGV	O
)	O
,	O
and	O
the	O
UCSC	O
Genome	O
Browser	B-Application
.	O
</s>
<s>
Developers	O
of	O
other	O
genomics	O
software	O
can	O
use	O
the	O
GenomeSpace	B-Application
API	B-Application
to	O
add	O
their	O
tools	O
.	O
</s>
<s>
The	O
GenomeSpace	B-Application
project	O
is	O
a	O
collaboration	O
of	O
the	O
Mesirov	O
and	O
Regev	O
laboratories	O
at	O
the	O
Broad	O
Institute	O
;	O
the	O
Chang	O
laboratory	O
at	O
Stanford	O
University	O
;	O
the	O
Ideker	O
laboratory	O
at	O
the	O
University	O
of	O
California	O
,	O
San	O
Diego	O
;	O
the	O
Nekrutenko	O
laboratory	O
at	O
Pennsylvania	O
State	O
University	O
;	O
the	O
Segal	O
laboratory	O
at	O
the	O
Weizmann	O
Institute	O
of	O
Science	O
;	O
and	O
the	O
Haussler	O
and	O
Kent	O
laboratories	O
at	O
the	O
University	O
of	O
California	O
,	O
Santa	O
Cruz	O
.	O
</s>
<s>
GenomeSpace	B-Application
is	O
funded	O
by	O
the	O
National	O
Human	O
Genome	O
Research	O
Institute	O
of	O
the	O
National	O
Institutes	O
of	O
Health	O
.	O
</s>
