<s>
Fiji	B-Language
(	O
Fiji	B-Language
Is	O
Just	O
ImageJ	B-Language
)	O
is	O
an	O
open	B-License
source	I-License
image	B-Algorithm
processing	I-Algorithm
package	O
based	O
on	O
ImageJ2	B-Language
.	O
</s>
<s>
Fiji	B-Language
's	O
main	O
purpose	O
is	O
to	O
provide	O
a	O
distribution	O
of	O
ImageJ2	B-Language
with	O
many	O
bundled	O
plugins	B-Application
.	O
</s>
<s>
Fiji	B-Language
features	O
an	O
integrated	O
updating	O
system	O
and	O
aims	O
to	O
provide	O
users	O
with	O
a	O
coherent	O
menu	O
structure	O
,	O
extensive	O
documentation	O
in	O
the	O
form	O
of	O
detailed	O
algorithm	O
descriptions	O
and	O
tutorials	O
,	O
and	O
the	O
ability	O
to	O
avoid	O
the	O
need	O
to	O
install	O
multiple	O
components	O
from	O
different	O
sources	O
.	O
</s>
<s>
Fiji	B-Language
is	O
also	O
targeted	O
at	O
developers	O
,	O
through	O
the	O
use	O
of	O
a	O
version	B-Application
control	I-Application
system	I-Application
,	O
an	O
issue	O
tracker	O
,	O
dedicated	O
development	O
channels	O
,	O
and	O
a	O
rapid-prototyping	O
infrastructure	O
in	O
the	O
form	O
of	O
a	O
script	O
editor	O
which	O
supports	O
BeanShell	B-Language
,	O
Jython	B-Language
,	O
JRuby	B-Language
,	O
Clojure	B-Language
,	O
Groovy	B-Application
,	O
JavaScript	B-Language
,	O
and	O
other	O
scripting	O
languages	O
,	O
as	O
well	O
as	O
just-in-time	O
Java	B-Language
development	O
.	O
</s>
<s>
Many	O
plugins	B-Application
exist	O
for	O
ImageJ	B-Language
,	O
that	O
have	O
a	O
wide	O
range	O
of	O
applications	O
,	O
but	O
also	O
a	O
wide	O
range	O
of	O
quality	O
.	O
</s>
<s>
Further	O
,	O
some	O
plugins	B-Application
require	O
specific	O
versions	O
of	O
ImageJ	B-Language
,	O
specific	O
versions	O
of	O
third-party	O
libraries	O
,	O
or	O
additional	O
Java	B-Language
components	O
such	O
as	O
the	O
Java	B-Language
compiler	O
or	O
Java	B-Language
3D	I-Language
.	O
</s>
<s>
One	O
of	O
Fiji	B-Language
's	O
principal	O
aims	O
is	O
to	O
make	O
the	O
installation	O
of	O
ImageJ	B-Language
,	O
Java	B-Language
,	O
Java	B-Language
3D	I-Language
,	O
the	O
plugins	B-Application
,	O
and	O
further	O
convenient	O
components	O
,	O
as	O
easy	O
as	O
possible	O
.	O
</s>
<s>
As	O
a	O
consequence	O
,	O
Fiji	B-Language
enjoys	O
more	O
and	O
more	O
active	O
users	O
.	O
</s>
<s>
While	O
Fiji	B-Language
was	O
originally	O
intended	O
for	O
neuroscientists	O
(	O
and	O
continues	O
to	O
be	O
so	O
)	O
,	O
it	O
accumulated	O
enough	O
functionality	O
to	O
attract	O
scientists	O
from	O
a	O
variety	O
of	O
fields	O
,	O
such	O
as	O
cell	O
biology	O
,	O
parasitology	O
,	O
genetics	O
,	O
life	O
sciences	O
in	O
general	O
,	O
materials	O
science	O
,	O
etc	O
.	O
</s>
<s>
As	O
stated	O
on	O
the	O
official	O
website	O
,	O
the	O
primary	O
focus	O
is	O
"	O
life	O
sciences	O
"	O
,	O
although	O
Fiji	B-Language
provides	O
many	O
tools	O
helping	O
with	O
scientific	O
image	B-General_Concept
analysis	I-General_Concept
in	O
general	O
.	O
</s>
<s>
Fiji	B-Language
is	O
most	O
popular	O
in	O
the	O
life	O
sciences	O
community	O
,	O
where	O
the	O
3D	O
Viewer	O
helps	O
visualizing	O
data	O
obtained	O
through	O
light	O
microscopy	O
,	O
and	O
for	O
which	O
Fiji	B-Language
provides	O
registration	B-Algorithm
,	O
segmentation	B-Algorithm
,	O
and	O
other	O
advanced	O
image	B-Algorithm
processing	I-Algorithm
algorithms	I-Algorithm
.	O
</s>
<s>
The	O
Fiji	B-Language
component	O
TrakEM2	O
was	O
successfully	O
used	O
and	O
enhanced	O
to	O
analyze	O
neuronal	O
lineages	O
in	O
larval	O
Drosophila	O
brains	O
.	O
</s>
<s>
Fiji	B-Language
was	O
prominently	O
featured	O
in	O
Nature	O
Methods	O
review	O
supplement	O
on	O
visualization	O
.	O
</s>
<s>
Fiji	B-Language
is	O
fully	O
open	B-License
source	I-License
.	O
</s>
<s>
Its	O
sources	O
live	O
in	O
a	O
public	O
Git	B-Application
repository	O
.	O
</s>
<s>
Fiji	B-Language
was	O
accepted	O
as	O
organization	O
into	O
the	O
Google	B-Application
Summer	I-Application
of	I-Application
Code	I-Application
2009	O
,	O
and	O
completed	O
two	O
projects	O
.	O
</s>
<s>
The	O
scripting	O
framework	O
,	O
which	O
supports	O
JavaScript	B-Language
,	O
Jython	B-Language
,	O
JRuby	B-Language
,	O
Clojure	B-Language
,	O
BeanShell	B-Language
,	O
and	O
other	O
languages	O
,	O
is	O
an	O
integral	O
part	O
of	O
the	O
development	O
of	O
Fiji	B-Language
;	O
many	O
developers	O
prototype	O
their	O
plugins	B-Application
in	O
one	O
of	O
the	O
mentioned	O
scripting	O
languages	O
,	O
and	O
gradually	O
turn	O
the	O
prototypes	O
into	O
proper	O
Java	B-Language
code	I-Language
.	O
</s>
<s>
To	O
this	O
end	O
,	O
as	O
one	O
of	O
the	O
aforementioned	O
Google	B-Application
Summer	I-Application
of	I-Application
Code	I-Application
projects	O
,	O
a	O
script	O
editor	O
was	O
added	O
with	O
syntax	O
highlighting	O
and	O
in-place	O
code	O
execution	O
.	O
</s>
<s>
The	O
scripting	O
framework	O
is	O
included	O
in	O
the	O
Fiji	B-Language
releases	O
,	O
so	O
that	O
advanced	O
users	O
can	O
use	O
such	O
scripts	O
in	O
their	O
common	O
workflow	O
.	O
</s>
<s>
The	O
development	O
benefits	O
from	O
occasional	O
hackathons	O
,	O
where	O
life	O
scientists	O
with	O
computational	O
background	O
meet	O
and	O
improve	O
their	O
respective	O
plugins	B-Application
of	O
interest	O
.	O
</s>
<s>
The	O
script	O
editor	O
in	O
Fiji	B-Language
supports	O
rapid	O
prototyping	O
of	O
scripts	O
and	O
ImageJ	B-Language
plugins	B-Application
,	O
making	O
Fiji	B-Language
a	O
powerful	O
tool	O
to	O
develop	O
new	O
image	B-Algorithm
processing	I-Algorithm
algorithms	I-Algorithm
and	O
explore	O
new	O
image	B-Algorithm
processing	I-Algorithm
techniques	O
with	O
ImageJ	B-Language
.	O
</s>
<s>
Fiji	B-Language
runs	O
on	O
Windows	O
,	O
Linux	O
,	O
and	O
Mac	O
OS	O
X	O
,	O
Intel	O
32-bit	O
or	O
64-bit	O
,	O
with	O
limited	O
support	O
for	O
MacOSX/PPC	O
.	O
</s>
