<s>
The	O
Bioclipse	B-Language
project	O
is	O
a	O
Java-based	O
,	O
open-source	B-Application
,	O
visual	O
platform	O
for	O
chemo	O
-	O
and	O
bioinformatics	O
based	O
on	O
the	O
Eclipse	B-Application
Rich	O
Client	O
Platform	O
(	O
RCP	O
)	O
.	O
</s>
<s>
Like	O
any	O
RCP	O
application	O
,	O
Bioclipse	B-Language
uses	O
a	O
plugin	B-Application
architecture	O
that	O
inherits	O
basic	O
functionality	O
and	O
visual	O
interfaces	O
from	O
Eclipse	B-Application
,	O
such	O
as	O
help	O
system	O
,	O
software	O
updates	O
,	O
preferences	O
,	O
cross-platform	B-Operating_System
deployment	I-Operating_System
etc	O
.	O
</s>
<s>
Via	O
its	O
plugins	B-Application
,	O
Bioclipse	B-Language
provides	O
functionality	O
for	O
chemo	O
-	O
and	O
bioinformatics	O
,	O
and	O
extension	O
points	O
that	O
easily	O
can	O
be	O
extended	O
by	O
other	O
,	O
possibly	O
proprietary	O
,	O
plugins	B-Application
to	O
provide	O
additional	O
functionality	O
.	O
</s>
<s>
The	O
first	O
stable	O
release	O
of	O
Bioclipse	B-Language
includes	O
a	O
Chemistry	B-Language
Development	I-Language
Kit	I-Language
(	O
CDK	O
)	O
plugin	B-Application
to	O
provide	O
a	O
chemoinformatic	O
backend	O
,	O
a	O
Jmol	B-Language
plugin	B-Application
for	O
3D-visualization	O
of	O
molecules	O
,	O
and	O
a	O
BioJava	B-Language
plugin	B-Application
for	O
sequence	O
analysis	O
.	O
</s>
<s>
Recently	O
,	O
the	O
R	B-Language
platform	O
,	O
using	O
StatET	O
,	O
and	O
OpenTox	O
were	O
added	O
.	O
</s>
<s>
Bioclipse	B-Language
is	O
developed	O
as	O
a	O
collaboration	O
between	O
the	O
Proteochemometric	O
Group	O
,	O
Dept	O
.	O
</s>
<s>
The	O
development	O
is	O
backed	O
up	O
by	O
the	O
International	O
Bioclipse	B-Language
Association	O
.	O
</s>
<s>
The	O
Bioclipse	B-Language
Scripting	O
Language	O
(	O
BSL	O
)	O
is	O
a	O
scripting	O
environment	O
,	O
currently	O
based	O
on	O
JavaScript	B-Language
and	O
Groovy	B-Application
.	O
</s>
<s>
thus	O
provide	O
means	O
to	O
make	O
analyses	O
in	O
Bioclipse	B-Language
sharable	O
,	O
for	O
example	O
,	O
on	O
MyExperiment.org	O
.	O
</s>
<s>
Bioclipse	B-Language
defines	O
a	O
number	O
of	O
core	O
data	O
types	O
that	O
managers	O
support	O
,	O
allowing	O
information	O
to	O
be	O
used	O
between	O
these	O
managers	O
.	O
</s>
