Email address to which results are to be sent:
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Add a short identifying remark for this sequence:
Type or paste your amino acid sequence information below.
SPECIFY INPUT FORMAT:
Single sequence in 1-letter code.
PSI-BLAST to generate alignment.
--- or ---
Multiple sequence alignment file in
Optional chain identifier:
A multiple sequence alignment in SAF format (only if using PSI-BLAST).
Sequence names and weights used for generating the sequence profile.
A set of multiple, predicted fragments sorted by confidence.
A set of predicted backbone angles and confidences based on linking fragments.
A one-dimensional prediction of backbone angle (phi/psi) regions based on linked fragments.
A prediction of 3-state secondary structure, backbone angles and context symbols using
A set of 3D coordinates in PDB format, generated using ROSETTA.
Method to use:
Use PHD + I-sites
Use I-sites ONLY
HMMSTR model to use:
Maximum e-value for PSI-BLAST:
Window size for SEG filter:
Low-complexity cutoff for SEG filter:
Ignore I-sites shorter than
in fragment prediction report.
Minimum allowed percent identity for inclusion in profile :
Minimum allowed confidence of fragment prediction:
Number of parent sequence in an input multiple alignment (usually 1) :
Look for a homolog of known structure using Psi-Blast (non ab-initio prediction!):
Number output coordinates starting from: