Senior Bioinformatics Scientist, Icahn School of Medicine at Mount Sinai, Department of Genetics and Genomic Sciences; New York, NY, USA.
Projects: RVS, a knowledge base annotating genetic variants. DIVAS, genetic variants in disease cohorts. Resilience, a search for buffering effects.
Principal Scientist, Hoffmann-La Roche, Pharma Research and Early Development; Nutley, NJ, USA
Projects: NGS analysis pipelines, whole exome sequencing; molecular profiling of 500 cancer cell lines; text mining for genetic variants and phenotypic impacts.
Research visit, University of Manchester, Faculty of Life Sciences, in Casey Bergman's lab; Manchester, Lancashire, UK
Project: streamlining text mining components for production-scale web services.
Post-doctoral research associate, BioAI Lab, Computer Science and Engineering, Arizona State University; Tempe/Phoenix, USA
Projects: Biomedical relation extraction using LinkGrammar and Stanford parse trees. PTQL: a parse tree database and query language. Gene mention recognition and normalization. SNPshot: mapping genetic variants to pharmacogenetic effects by literature mining.
Full courses taught: 1) Biomedical Natural Language Processing. 2) Biomedical Network Analysis.