CRISPRmap provides a quick and detailed insight into repeat conservation and diversity of both bacterial and archaeal systems. It comprises the largest dataset of CRISPRs to date and enables comprehensive independent clustering analyses to determine conserved sequence families, potential structure motifs for endoribonucleases, and evolutionary relationships.
CRISPRmap - CRISPR Conservation
Try CRISPRmap with these examples:
When using CRISPRmap please cite :
- Omer S. Alkhnbashi, Fabrizio Costa, Shiraz A. Shah, Roger A. Garrett, Sita J. Saunders, and Rolf Backofen.
CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci
Bioinformatics, 2014, 30(17), 489-496.
- Sita J. Lange, Omer S. Alkhnbashi, Dominic Rose, Sebastian Will and Rolf Backofen.
CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems
Nucleic Acids Research, 2013, 41(17), 8034-8044.
Results are computed with CRISPRmap version meta