Primary Citation PubMed: 15893666
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Search for allosteric disulfide bonds in NMR structures.
(2007) BMC Struct Biol 7
PubMed: 17640393 | PubMedCentral: PMC1949407 | DOI: 10.1186/1472-6807-7-49
2 Eght X-ray structures from PDB IDs 1g9m , 1g9n , 1gcn , 1rzj , 1rzk , 1yy1 , 1yym and 2b4c were used for this analysis from.
Publication Year: 2007
Alignment of non-covalent interactions at protein-protein interfaces.
(2008) PLoS One 3
PubMed: 18382693 | PubMedCentral: PMC2274958 | DOI: 10.1371/journal.pone.0001926
We have compared the natural complex interfaces (PDB code: 1rzj, chains C and G) and mimicry interface (PDB code: 1yym, chains M and G) using Galinter.
Publication Year: 2008
CD4 binding determinant mimicry for HIV vaccine design.
(2012) Front Immunol 3
PubMed: 23251137 | PubMedCentral: PMC3523313 | DOI: 10.3389/fimmu.2012.00383
, CD4 liganded 1GC1, 1G9M, 1G9N, 1RZJ, 1RZK, 3JWD, 3JWO, 2NXY, 2NXZ, 2NY5, 2B4C, 2QAD; unliganded 2BF1, 3TGQ, 3TGR, 3TGT, 3TIH; CD4BD OD antibody liganded 3NGB, 3SE8, 3SE9, 3U7Y, 2NY7, 3HI1, 3IDX; low... molecular-weight CD4 mimetic liganded 1YYL, 1YYM, 2I5Y, 2I60, 3TGS).
Publication Year: 2012
Structural plasticity and conformational transitions of HIV envelope glycoprotein gp120.
(2012) PLoS One 7
PubMed: 23300605 | PubMedCentral: PMC3531394 | DOI: 10.1371/journal.pone.0052170
The crystal structures of gp120 from YU2 isolate in complex with CD4M33 at 2.75 Å resolution (pdb id: 1YYL) and F23 at 2.2 Å resolution (pdb id: 1YYM) were used to analyze the dynamic ... roperties of gp120 when it was in complex with CD4 mimicking peptides.
( E ) CD4M33 (PDB ID:1YYL)  and ( F ) F23 (PDB ID: 1YYM)  .
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