I have recently acquired numerous images from a microscope. In order to use the information there, I have to use some of the images to create a much larger image. Because of the nature of the specimen I placed on the microscope, the 'larger image' won't necessarily be a perfect rectangle or square; it might be T-shaped or L-shaped, have some other irregular shape. In other words the areas where each individual image overlap aren't regularly distributed.
Is there a matlab plugin that allows the user to open each of the images for a given sample, manually overlap them, and then create a final image from the result? Does it work with 16-bit images?
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Thank you for your help everyone. I found a plug-in for a free microscopy software package that will let me do what I want to do. Apparently, I also need to learn how to use spell check, since I spelled 'help' as 'hepl' in the subject line for this post.
You could use imtransform() in the Image Processing Toolbox. There is not a built in application to build up a larger image by placing smaller, distorted images on a larger canvass and then dewarping them. You'd have to build that yourself or hire a consultant to write it for you, or else use Photoshop or similar photo-editing software.