Additional file 11.
Figure S7. (a-c) Average density plot for the methylation of ALR (a), ALR_ (b) and ALRb (c) comparing between EsCM (red) and CTRL (blue). Methylation density was consistently reduced in EsCM within the global coordinates of each repeat element (represented collectively here as 0.0 to 1.0 on the X-axis) as well as extending to the flanks (+3.0 and -3.0 kb) of the repeat elements. Light blue- and cream-colored error bars represent Bayesian credible intervals for CTRL and EsCM, respectively. See Movassagh et al. and Down et al. for detailed methods of methylation density analysis [10,39].
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Haider et al. Genome Biology 2012 13:R90 doi:10.1186/gb-2012-13-10-r90