Release Notes: Annotations for the workflow editor allow you to mark areas of the workflow and add descriptive notes. Snap to grid, show/hide grid, and workflow-image export. Improvements to spectra-plot annotations. Support for European-style semicolon-delimited CSV and format auto-detection. Legacy tool import filters allowing modified tools to provide a backwards-compatible interface for loading. Fixes for PCA/PLS-DA on >2 components.
Release Notes: Improved figure outputs and interactive plots (zoom, pan). Sample class line-style and marker-style tools keeping plots consistent throughout. MATLAB and R integration: run scripts on your locally installed MATLAB/R platforms directly from within Pathomx.MATLAB data export: export datasets directly to MATLAB format workspace files. NMRLab integration. Experimental native wrappers for MATLAB-based NMR processing tools (requires MATLAB). Numerous bugfixes and improvements; increased processing speed.
Release Notes: This release adds a new name, Pathomx, reflecting pathway-centered analysis of multi-omics data, interactive figures allowing for zooming and panning through displayed datasets, sidebar panels allowing easier configuration of tool settings with on-the-fly recalculation, and a selection of new tools, including baseline correction and autophasing for NMR spectra.
Release Notes: A completely new drag-drop visual editor was added. It allows you to create analysis workflows by dragging tools into the workspace, editing connections by dragging data lines between tools, and using inline views to get an overview of current processing. Data can be dropped into the workspace for instant import. It also added live per-tool progress notifications, bars, and status indicators. Errors are flagged with help text (tooltips on tools when indicated red).
Release Notes: This version adds a number of important features over the previous release. It has multi-threaded processing, allowing multiple analysis steps to be performed in parallel to speed up your analysis. There is an online plugin repository with a built-in installation and update system. There is Windows 7 & 8 (x64) and Mac OS X support.
Release Notes: An interactive workflow editor allows dynamic creation of analysis workflows from components. Immediate multi-threaded analysis of source data with predictable outputs is provided. A plugin system allows adding and removing of components.
Release Notes: MetaPath is now aware of reaction compartmentalization, as derived from BioCyc protein localization data. You can now visualize reactions with metabolite structure images to see actual molecular changes taking place at each step. Images can also be colored for data analysis purposes. MetaPath now supports GPML natively and can display GPML marked-up pathways within the application. Data visualization is not currently supported (it is present in the underlying gpml2svg code, but needs a bit of work for translating database identifiers).
Release Notes: This bugfix release adds a working Mac .app build and support for KEGG predefined layouts and Metabolights data formats.
Release Notes: Initial release of MetaPath as a Python package (via PyPi) .egg, and .gz, via github repo and downloadable Mac OS X .app bundle.