Bio-NLP resources database (BioNLPdb)
This page provides a compendium of Information Retrieval (IR), Information Extraction (IE),
Text Mining and literature processing applications developed for providing access to information contained in life sciences and biomedical literature.
Additionally links to some relevant scientific literature repositories and search engines are provided.
You can check out a page containing a list of
ALL APPLICATIONS or search for specific tools using a basic keyword search.
You can also check out a review article published
in Genome Biology providing an overview of currently existing applications
in biomedical text mining:
Krallinger M, Valencia A. and Hirschman L. Linking genes to literature: text mining, information extraction, and retrieval applications for biology Genome Biology 2008, 9(Suppl 2):S8
You can find below the list of latest tools added:
You can contact us for:
- Adding a new tool and helping us to keep this list up to date
- Ask for changes on existing ones
- Comment on problems accessing the collection of BioNLP tool descriptions
Please send me through feedback through e-mail: firstname.lastname@example.org
Tutorial/Teaching: Here you can find the link
to a text mining tutorial/lecture I have prepared for bioinformatics
and biology students. I gave this lecture at several summer schools and
bioinformatics master courses held at different locations mostly within Spain.
You can re-use these slides for your own presentation, but please be so kind
and acknowledge where you took them from (i.e. by Krallinger,09).