|Summary of gene compilation and analysis methods|
|Gene group||Xl-PSIDs||HGNC symbols||Method of compilation||Sequence similarity mapping||DAVID analysis|
|IET||453||594*||Scientific literature [22-27,42,85]||All||Yes|
|DF||139||157*||Keyword query (OMIM database)||All||No|
|IC||74||210*||Scientific literature [66,88-90]||All||No|
|IT||180||130||Keyword query (Affymetrix annotation file) and scientific literature||Subset (IC)||No|
|pTF||795||790*||Keyword query (NetAffx™ analysis center and Xenbase)||----||Yes|
|10thequal tally decile||1218||----||Rank ordered top 10% based on number of Xl-PSIDs||----||Yes|
|10thequal intensity decile||40||----||Rank ordered based on intensity value range||----||Yes|
The number of Xl-PSIDs in all inner ear gene categories (IET, DF, IC, IT, pTF) and in the 10th deciles are reported together with compilation and analysis methods for each gene group. The table reports the number of symbols for HGNC proteins that formed affirmative pairwise alignments with Xl-PSID consensus sequences through sequence similarity mapping (TBLASTN). *HGNC symbols were linked to more than one Xl-PSID, resulting in a number that is higher than the number Xl-PSIDs.
Powers et al.
Powers et al. BMC Genomics 2012 13:225 doi:10.1186/1471-2164-13-225