Usually Linux programs store user's settings in ~/.* directories. But unfortunately some developers (of some applications I need) do not follow this rule and don't start their settings storage folders names with a dot. This results in never-user-used folders cluttering (not the right word perhaps, as there are not many, but they annoy anyway) a home directory. Renaming them is not an option, as the applications won't find them in this case (and will create them again).
Is there a way to hide a folder having no dot starting its name from being displayed in common file system browsers (I actually use Thunar of XFCE, alongside with Midnight Commander and Krusader, but wouldn't mind to know about Nautilus too).