truncateEnd


testPersistentSequence


simpleTest


deleteTest


deleteInMiddle


fillNode


emptyFind


fillRootNodeOnly


assertFindStuff


rootOverflow


deleteFromNothing


deleteNotInTree


simpleDeleteMakeRootEmpty


bookInsert


deleteRight


bookDelete


updateValue


emptyFindTest


fillRootNodeOnlyTest


rootOverflowTest


deleteFromNothingTest


deleteNotInTreeTest


simpleDeleteMakeRootEmptyTest


bookInsertTest


bookDeleteTest


updateValueTest


invalidNodeSize


bigTree


splitNode


validateNode


writeKey


internalNodeSplit


leafNodeSplit


leafNodeInsert


deleteFromLeaf


leafNodeUnderflowMerge


internalNodeChangeAnchorKey


internalNodeApplyMerge


internalNodeMergeAndUnderflow


readWriteLeafNode


readWriteInternalNode


emptyBlinkTree


insertSplitLeafRoot


insertSplitLeafInternal


testStackRefill


deleteFromFullLeaf


leafHighKeyChange


multipleEdgeCaseDeleteTest


leafNodeUnderflowTest


internalNodeUnderflowTest


threeLevelTree


onDiskTest


bigBLinkTreeTest


scheduleNothing


allInOneChunk


prefixOrAppend


concurrentWrite


generateBlob


testReadTimeSeriesAsFloat


testWriteInMiddle


testWriteAtEnd


testWriteIntoHole


testMergeMany


testWriteReadManySeries


readAllFloatTimeSeries


deleteDataInterval


testReadAllTimeSeriesWithEmptyTimeSeries


overwriteIsFalse


transactionSpeed


writeStream


writeZeroLengthStream


readIncompleteStream


zeroLengthFile


smallBlob


readSmallBlobUncommitted


writeWithOutTransaction


deleteBlob


testReadOldBlob


testWriteBlobExclusively


writeMultipleTimesToSameBlob


constructTimeSeriesClient


originList


validList


assertEmptyTimeSeries


simpleTimeSeriesBatchTest


readMixedTimeSeriesBatchTest


writeWithoutTransaction


readWrongType


explicitDelete


readNonExistentDoubleTimeSeries


simpleDoubleTimeSeries


avoidDeadlockOnRead


avoidDeadlockOnCommit


closeTest


testRollbackTransactionIfActiveWhenNotActive


testRollbackTransactionIfActiveWhenActive


generateSeries


twoGigBlobTest


initialTransaction


transactionRollback


transactionRollbackIfActive


transactionRollbackIfActiveInactive


transactionCommitInactive


transactionRollbackInactive


readNonExistentBlob


writeBlobNullData


writeBlob


readBlob


readAllTimeSeriesAsFloatNullArray


readAllTimeSeriesAsFloatNullValue


readTimeSeriesAsFloatNullArray


readTimeSeriesAsFloatNullValue


writeTimeSeriesNullArray


writeTimeSeriesNullValue


writeFloatTimeSeries


writeDoubleTimeSeries


readFloatTimeSeriesNonExistent


readFloatTimeSeries


readDoubleTimeSeries


recordKeeping


originatorByCadence


cadenceMatch


toPipeString


transferTo


transferFrom


asFloatTimeSeries


asDoubleTimeSeries


fromPipeString


createNewInterval


intern


internPathPart


validateNamePart


validatePathPart


validTokenChar


readFrom


emptySeries


parameterName


writeOutClass


generateClient


serverMethodSuffix


capitalizeFirstLetter


writeOutSingleParameter


readInSingleParameter


generateAbstractReturnMethod


methodSignature


methodIndex


generateSignature


generateClientMethodBody


generateServer


generateParseMethodName


generateServerMethodBody


packageName


className


classDepth


sortOnInheritanceDepth


throwExceptionFromServer


compress


findAllocator


foundDirectoryWithHash


randomAccessStorage


createStorage


allocateLane


directoryForBin


idToFile


toBin


fileToId


enterDirectory


prune


collisionPerformance


loadDirectoryHash


findPath


isNew


isMetaLengthNew


isDataLengthNew


newTransportClient


newTransportServer


readMessage


startMessage


doAdmit


doProtocolVersionCheck


outputStream


inputStream


versionBuffer


doVersionCheck


socketChannel


startMethod


checkDeadlock


decodeRemoteException


safeRead


allocateBuffer


fillHeader


receiveMessage


performClose


initialValue


cleanFileStore


returnGetServerId


returnPrepare


returnReadTimeSeries


returnRecover


readBlobAsStream


readAllTimeSeriesAsFloat


readTimeSeriesAsFloat


checkConcurrentModification


returnStatus


encodeRequestReadTimeSeriesBatch


returnReadTimeSeriesBatch


readTimeSeriesBatch


readAllTimeSeriesAsDouble


returnReadAllTimeSeriesAsDouble


readTimeSeriesAsDouble


returnReadTimeSeriesAsDouble


implementMe


checkStreamInUse


checkBlobWrite


deleteTimeSeries


checkRoot


readTimeSeriesSet


convertSimpleToUser


readSingleSeries


writeCosmicRaySeries


dispatchSelectionKey


decodeReadBlobAsStream


executeCleanFileStore


executeCommit


executeForget


executeGetServerId


executePrepare


executeRecover


executeRollback


executeShutdown


executeStart


isDeleteBlob


isDeleteTimeSeries


isGetServerId


isPrepare


isReadBlobAsStream


isRecover


isRollback


isShutdown


isStart


sendBackToClient


checkShutDown


executeDeleteBlob


executeDeleteTimeSeries


executeStatus


executePing


executeClose


decodeReadTimeSeriesBatch


executeReadAllTimeSeriesAsDouble


executeReadTimeSeriesAsDouble


fileTransactionManager


listCosmicRaySeries


stateDescription


nextEntry


doneWriting


accessOrder


makeOrder


clientThreadName


addXFileToTransaction


removeXFileFromTransaction


executorService


waitForUserShutdown


checkDead


isReadOnly


completeRecovery


acquireWriteLock


releaseWriteLock


acquireReadLock


releaseReadLock


acquireTransactionLock


releaseTransactionLock


prepareTransaction


isDirty


doPrepare


doCommit


doRollback


doCleanRollback


waitingWarn


produceOneItem


addMeAsConsumer


processOneItem


beginLocalTransaction


openRandomAccessFile


doneWithFile


openStreamFile


commitLocal


prepareLocal


cleanUpInMemoryOnly


forceRollback


locationFactory


flushToJournal


reschedule


completeTransaction


addRandomAccess


addStreamFile


journalWriter


cosmicRayJournalWriter


checkStreamFileConsistency


findContext


origin


newFileSentinel


openChannel


mergeRecovery


dumpLockState


recoverSingleTransaction


parseLogFile


recoverStream


recoverRandomAccess


seriesFromTree


dumpTree


mergeEntry


checkDelete


readSeries


writeSeries


createQueryFromDirectory


readCosmicRaySeries


internalToUser


threadStackTrace


removeContext


metaData


fileMetaData


deleteInterval


deleteFile


addOperation


dataType


recoveryComplete


readVirtualLength


writeVirtualLength


updateVirtualAddress


readInternalAbsolute


writeInternalAbsolute


readWrite


headerLength


readChar


readFully


readLong


readShort


readUnsignedShort


readNode


deleteNode


writeNode


allocateAddress


rootNodeAddress


clearDirtyState


readRootChangeFromJournal


writeToJournal


writeJournal


truncateEndIfEmpty


allIndex


ensureSpace


findNextFalse


assertTrue


assertCheck


insertIfAbsent


rightMost


refillStack


splitInternalRoot


convertRootToInternalNode


replaceHighKey


shrinkTree


findLeftSibling


findRightSibling


toDot


internalM


minKey


insertNonFull


insertFull


childForKey


changeAnchorKey


applyMerge


underflow


checkRightNode


linksToDot


writeRightLink


leafM


deleteKey


checkTree


repackFromPrevious


repackFromNext


findReplacement


iterateFrom


traverse


printStack


runMetricsPoller


sendMetrics


exitDirectory


exitWithError


addTimeSeries


migrate


createDiskNodeIo


createBTree


createBadBTree


createGoodBTree


comparePairWithEntry


addBlob


parseAndStore


addCosmicRaySeries


loadFileStore


createInputStream


extractCosmicRay


sendTimeMetric


dumpStack


writeEntry


matchAny


slowMe


slowDown


nextDelay


delayForFileAndAddress


delayForFileAndAddressInternal


captureFile


findDataType


processAst


nextTree


extractInteger


extractDouble


scheduleRead


gapCount


parallelFind


createCompressedArchive


createArchive


extractCompressedArchive


extractArchive


convertStringArray


constantToAcronym


constantToCamel


toHexString


fillCopyOf


copyArray


compareArray


toSet


doubleToFloat


insertAt


parseSystemProfilerMemory


logMemoryUsage


byName


byType


handleNotification


closeProcess


grabOutput


allAsList


addNewGlobalMetric


addNewThreadMetric


decrement


convertToOpenType


addAttribute


convertReturnValue


newAutoTabularType


newAutoCompositeType


tableIndices


tryLock


releaseLock


performAllWork


loadList


loadSet


loadMap


loadPrimitiveArray


loadArray


populateArray


loadListComponent


populateList


loadPrimitive


buildTree


dumpNode


readFloat


readDouble


saveObject


saveClass


saveClassArray


saveList


saveSet


saveMap


isPrimitive


savePrimitive


findChild


readBinFile


writeBinFile


classHierarchy


isTopLevelClass


isArray


isPrimitiveArray


parseClass


isProxyIgnoreStatics


exceptionMessage


fireClassStart


fireClassEnd


firePrimitiveField


firePrimitiveArrayField


fireClassField


fireClassArrayField


fireUnknownType


pushPath


popPath


updateFilterState


pathString


beginNonPrimitiveArray


beginClass


endClass


endNonPrimitiveArray


saveEmpty


writeCharArray


writeDoubleArray


writeFloatArray


writeLongArray


writeShortArray


saveEmptyPrimitive


writeDate


readInterval


writeInterval


inIntervalSet


mergeInterval


mergeSet


checkOverlap


testIllegalMap


testSaveLoadEmptyList


testSaveLoadList


testSaveLoadEmptySet


testSaveLoadSet


testSaveLoadEmptyMap


testSaveLoadMap


testSaveWithNullField


testSaveMapWithNullValue


testBuildTree


testAddChild


testRemoveChild


testFindChild


testFindChildWithNonexistentName


testToHexString


testTruncate


testConvertStringArray


testConstantToAcronym


testConstantToAcronymWithLeadingUnderscore


testConstantToAcronymWithEmptyString


testConstantToCamel


testConstantToCamelWithLeadingUnderscore


testConstantToCamelWithEmptyString


testGrabOutput


testOpenFileLimit


testByName


testByNameWithEmptyName


checkIsPrivate


trimPrefix


createTestValue


subsetInRange


edgeInRange


leftSidePartiallyInRange


rightSidePartiallyInRange


completelyNotInRange


spanHole


spanPrefix


spanSuffix


spanSuperSet


spanSubSet


clippedSpanHole


clippedSpanPrefix


clippedSpanSuffix


clipSpanSuperSet


clipSpanSubSet


clipSpanDisjoint


deleteNothing


deleteHole


deleteBefore


deleteAfter


deleteBreakMiddle


deleteBreakLeftMiddle


deleteBreakRightMiddle


deleteExactOverlap


deleteLeftOverlap


deleteRightOverlap


deleteCompleteLeftOverlap


deleteMultiple


completeCompleteRightOverlap


deleteCompleteSpan


deleteCompleteOverlap


filterFileCopy


filterDirectoryCopy


unfilteredCopy


checkCopy


testTarWithLargeFile


testListAll


testFindSome


testFindFilter


createTarRootDirectory


testTar


testTarIntern


testTarWithoutCompression


testTarWithCompression


createHierarchy


checkHierarchy


testGetMode


testSetMode


testMode


oneOf


testValueMetricEmpty


testValueMetricSimple


testValueMetricMultiple


executeSynchronous


testMakeCopy


testReset


testToLogString


testPersist


testIntervalMetricSimple


testIntervalMetricMultiple


testCounterMetricSimple


testCounterMetricMultiple


testFillStringArrayArray


checkSize


retrieveSaturationModel


twoDBlackModel


readNoiseModel


linearityModel


undershootModel


gainModel


geometryModel


rollTimeModel


pointingModel


flatFieldModel


saturationModel


retrieveLinearity


retrieveLinearityBetween


persistLinearity


retrieveMostRecentLinearityModel


retrieveRollTimeModelAll


convertRollTimesToModel


retrieveMostRecentRollTimeModel


retrieveRollTimeModel


persistScatteredLight


retrieveScatteredLight


createImage


persistReadNoise


retrieveReadNoise


retrieveReadNoiseExact


retrieveMostRecentReadNoiseModel


retrieveReadNoiseModelAll


persistLargeFlatField


retrieveLargeFlatField


retrieveLargeFlatFieldNext


retrieveSmallFlatFieldImageTimes


retrieveSmallFlatFieldImage


retrieveSmallFlatFieldImageExact


retrieveFlatField


retrieveFlatFieldNext


retrieveFlatFieldModelAll


retrieveMostRecentFlatFieldModel


makeNextVersionHistory


rewriteHistory


updateModelMetaData


onlyAsciiStringCopy


persistObscuration


retrieveObscuration


retrieveUndershoot


retrieveUndershootModelAll


retrieveMostRecentUndershootModel


persistGain


retrieveGain


retrieveMostRecentGainModel


retrieveGainModelAll


populateTimeGridOfGains


persistGeometry


retrieveGeometry


retrieveGeometryMostRecent


retrieveGeometryNext


retrieveGeometryModelRange


retrieveGeometryModel


retrieveGeometryModelAll


retrieveTwoDBlackImageTimes


retrieveMostRecentTwoDBlackModel


retrieveTwoDBlackModelAll


retrieveTwoDBlackImage


retrieveTwoDBlackImageExact


retrievePointingModel


writeApertureRegionFile


testInitialImport


testImportAndRetrieve


testRetrieveModelSeasonChannel


testChannelToModuleOutput


loadStuff


testImportIntegrity


testImportIntegrityModel


TestAppendNewNominal


TestRewriteHistoryNominal


TestAppendNewFail


testAppendNewBad


testInsertBetween


TestRun


testRetrieveRange


testRetrieveType


testRetrieveModelType


testRetrieveModelTypeString


testModel


testModelAll


testModelZeroWidthDateRange


testAftFramework


testPersistObscuration


testRetrieveModelNoRange


testRetrieveModelRange


testCrossTalk


dataIsGood


testGetModel


testRetrieveSingleRollTime


testRetrieveMultipleRollTimes


testPersistRollTime


testRetrieveAllRollTimesModel


createRollTime


createRollTimes


testPersistPointing


testRetrievePointingModelArray


testRetrievePointingModelRange


testRetrievePointingModelAll


testModelDateRange


testModelMostRecent


testBlack


testPersistBad


testPersistGains


testPersistGainsIndividual


testPersistGainFail


testPersistGainFailIndividual


testModelRetrieveRange


testModelRetrieve


testModelRetrieveMostRecent


testModelInterpolation


createQuery


createCriteria


uniqueResult


toCanonicalString


toCriterion


listToString


createPattern


appendValue


retrievePlanetSummaryByPipelineInstanceId


retrievePlanetSummaryBeforePipelineInstance


returnSummary


deleteLimbDarkeningModelCollection


modelParameterCovariance


quarter


startCadence


endCadence


differenceImageCentroid


orbitalPeriod


robustStatistic


trialTransitPulseDuration


weakSecondary


bootstrapHistogram


statisticRatioBelowThreshold


correlationImageCentroid


initialContext


createDataSource


createOracleDataSource


fromDialectString


unqualify


isNotEmpty


collectionTableName


foreignKeyColumnName


logicalCollectionTableName


logicalCollectionColumnName


newWrapperConnection


buildHibernateConfiguration


tableCount


rowCount


generateNodeName


machineName


macToString


commitLocalTransaction


rollbackLocalTransactionIfActive


localTransactionIsActive


closeCurrentSession


writeDesiredTableData


scanForClasses


processClass


readPassword


wrapConnection


executeScript


dropTable


evictAll


queryString


retrieveGainExact


retrieveMostRecentReadNoise


retrieveMostRecentUndershoot


retrieveMostRecentSmallFlatFieldImageHistoryModel


retrieveMostRecentGain


retrieveMostRecentTwoDBlackImageHistoryModel


retrieveMostRecentTwoDBlackImage


retrieveMostRecentLargeFlatField


retrieveMostRecentPointing


retrieveMostRecentRollTime


retrieveMostRecentLinearity


retrieveMostRecentGeometry


retrieveReadNoiseNext


retrieveGainsBetween


retrieveAllGains


retrieveGeometryExact


retrieveMostRecent


retrieveNext


retrieveBetween


retrieveLargeFlatFieldExact


retrieveExact


retrieveLinearityAll


retrieveLinearityExact


retrieveBetweenType


retrieveTypeBetween


retrieveSmallFlatFieldImageDateNext


retrieveMostRecentSmallFlatFieldImageTime


retrievePointing


retrievePointingExact


retrieveNextPointing


retrievePointingRa


retrievePointingRoll


retrievePointingRasArray


retrieveRollTime


retrieveRollTimeBetween


retrieveRollTimeExact


retrieveAllRollTimes


retrieveUndershootExact


retrieveHistory


retrieveTwoDBlackImageHistoryModel


retrieveHistoryByIngestDate


retrieveActiveHistory


regionCompositeString


retrieveReport


retrieveCalBlobByCadence


checkCadence


fromPipelineName


addProducerTaskId


describe


putModuleParameterSet


newVersion


findNodeForPath


addPipelineParameterSetName


retrieveLatestRegistry


retrieveLatestModelRevision


lockCurrentRegistry


importNewModelRegistry


retrieveModelType


retrieveAllActive


cancelAllActive


updateName


instanceState


isInstanceComplete


retrieveLatestVersionForName


putModuleParameterSetName


shortName


retrieveByTaskId


retrieveByInstanceId


definitionNodeAt


clearStaleState


generateResetQuery


taskCount


taskCountByState


isInstanceNodeComplete


deletePipeline


updateTaskCount


didLastPipelineConverge


createFileLog


retrieveLatestFileLog


fileLogCount


cadenceRangeForDispatchLog


longCadenceToShortCadence


retrieveActualObservationTimeForTargetTable


retrieveActualTableTimes


retrieveActualCadenceTimeForTargetTable


retrieveGapCadence


retrieveGapChannel


retrieveGapTarget


retrieveAncillaryDictionary


uncertainty


createAttitudeAdjustment


retrieveLatestAttitudeAdjustment


createModuleOutputMetricReport


retrieveModuleOutputMetricReport


createFocalPlaneMetricReport


retrieveFocalPlaneMetricReport


retrieveByPipelineTaskId


produceQuery


valueOfShortName


retrieveTargetTables


createMaskTable


retrieveMaskTable


retrieveMaskTableForTargetTable


retrieveLongCadenceTargetTable


retrieveShortCadenceTargetTable


retrieveBackgroundTargetTable


retrieveXTargetTableForTargetTable


retrieveImage


retrieveImageInternal


createTargetLabelQuery


toCadenceType


targetDefinitionFor


targetDefinitionFrom


apertureOffset


createTargetAperture


deleteTargetAperture


retrieveMetricValueRowCount


retrieveMinimumId


deleteOldMetrics


encryptPassword


generateSalt


extractSalt


retrieveValue


addPrivilege


retrieveForPipelineInstance


retrieveChunk


validateMessageLength


retrieveUser


retrieveRole


retrieveHistogramGroupForEntireFocalPlane


retrievePipelineInstanceIdForLatestHistogramGroupForEntireFocalPlane


retrieveStartEndTimes


generateFileName


trendReport


trackAlertLevel


trendAlertLevel


createMetricReport


testSetId


parseModel


testStoreAndRetrieveByCadenceRange


testStoreAndRetrieveByBadCadenceType


testStoreAndRetrieveByBadCadenceRange


retrieveSkyGroupId


retrieveSkyGroup


retrieveCatKey


catKeyCount


retrieveInternal


retrieveTargetList


targetListCount


retrieveTargetListSet


retrieveTargetListSetByTargetTable


targetListSetCount


retrieveCustomTarget


customTargetCount


visibleCustomTargetCount


retrieveForSkyGroupId


retrieveCharacteristic


retrieveCharacteristicMap


characteristicCount


retrieveCharacteristicType


alternateId


alternateSource


astrophysicsQuality


blendIndicator


effectiveTemp


galacticLatitude


galacticLongitude


galaxyIndicator


parallax


photometryQuality


raProperMotion


skyGroupId


totalProperMotion


twoMassHMag


twoMassId


twoMassJMag


twoMassKMag


variableIndicator


stringValueOf


floatValueOf


doubleValueOf


createCondition


testToStringAndToCanonicalString


testParseExpressionNull


testParseExpression


testListToStringNull


testListToString


testValueOfInvalidConjunction


testValueOfInvalidComparison


testValueOf


checkChunk


isolationTest


testCreateRetrieve


testDeleteRoleConstraintViolation


testDeleteUserAndRole


testLoginName


testPassword


testDisplayName


testPhone


testUpdate


testName


testFormatParse


testFormatParseWithBlankLine


testFormatParseWithCommentLine


testFormatParseWithCommentOnTheSameLine


testFormatParseWithJunkLine


testFormatParseWithLeadingAndTrailingWhiteSpace


testFormatParseEmptyString


testFormatParseJunkString


testCreateRetrieveDelete


simpleDoubleSeries


overwriteDoubleSeries


testValueOfNull


testValueOfEmptyString


testValueOfUnknownCharacteristicType


testBuilder


testCompareToNull


testCompareTo


testFormatParseWithCommentOnItsOwnLine


testFormatParseWithBlankCommentOnItsOwnLine


testRetrieveCharacteristic


testRetrieveCharacteristicMap


testDeleteCharacteristic


testCharacteristicCount


testRetrieveCharacteristicType


testGetCharacteristicType


testCharacteristicType


createCharacteristic


testFormatDouble


testFormatLong


testFormatWithIllegalFormat


testTargetListCount


testDeleteTargetList


testRetrieveTargetListSet


testTargetListSetCount


testDeleteTargetListSet


createTargetListSet


testTargetListSet


testTargetList


createCelestialObject


testRetrieveSkyGroupId


testRetrieveInvalidSkyGroupId


testRetrieveSkyGroupBySkyGroupIdObservingSeason


testRetrieveSkyGroup


createCatKey


testCatKeyObject


testRetrieveCustomTarget


testCustomTargetCount


testVisibleCustomTargetCount


testFormatParseWithNullUncertainty


testFormatParseWithLeadingTrailingWhiteSpace


testSetName


testSetNameIllegalState


testSetListType


testSetState


testSetStart


testSetEnd


testGetTargetListIllegalState


testGetSetTargetList


testSetTargetListIllegalState


testSetCategory


testSetSource


testSetSourceType


testSupplementalImage


testRetrieveMaskTableForTargetTable


testRetrieveTargetTableForTargetTable


testRetrieveTargetTableLogOneItem


testRetrieveTargetTable


testDeleteTargetTable


testRetrieveMaskTable


testDeleteMaskTable


testRetrieveImage


testRetrieveTargetTableTypeExternalId


createTargetDefinitionInstance


testAperture


testApertureAperture


testGetTargetTable


testGetPipelineTask


testRetrieveHistogramGroupForEntireFocalPlane


testRetrievePipelineInstanceIdForLatestHistogramGroupForEntireFocalPlane


testDeleteHistogram


testDeleteHistogramGroup


testTooSmallMeanBlackEntryCount


testTooLargeMeanBlackEntryCount


createHistogramGroup


retrieveTargetAperture


retrieveEmptyTargetAperture


populateTargetAperture


createPadMetricReport


createTargetTables


storeNullPadMetricReport


testStoreAndRetrieve


constructFromClass


constructFromInstance


constructFromHibernateLoad


testPopulate


testGetProps


testStoreAndRetrieveTestBean


testStoreRenameRetrieveTestBean


testStoreAndRetrieveTestBeanWithEmptyArray


testEmptyStringArrayIsNotStringArrayOfNull


parseList


testUpdateEmptyRegistry


testUpdateNewModel


testUpdateNewModelWithLockedRegistry


pipelineInstanceCount


pipelineTaskCount


testStoreAndRetrieveInstance


testStoreAndRetrieveInstanceNode


testStoreAndRetrieveTask


testInstanceState


testEditPipelineInstance


testEditPipelineTask


testClearStaleState


newTask


createParameterSet


pipelineModuleDefinitionCount


pipelineModuleParamSetCount


paramSetNameCount


moduleNameCount


testRetrieveMissing


testEditPipelineModuleDefinition


testEditPipelineModuleParameterSetChangeParam


editParamSetChangeParam


testDeletePipelineModuleParameterSet


testDeletePipelineModule


testCreateSingleTask


testCreateAndUpdateSingleTask


retrieveByTask


verifyByTask


retrieveByInstance


verifyByInstance


testRetrieveWithNullModelRegistry


createPipelineDefinition


pipelineNodeCount


testEditPipelineDefinition


testEditPipelineDefinitionAddNextNode


testEditPipelineDefinitionAddBranchNode


testEditPipelineDefinitionChangeNodeModule


testEditPipelineDefinitionDeleteLastNode


createTriggerDefinition


testStoreAndRetrieveTriggerDefinition


testEditTriggerDefinition


testTaskFactory


retrieveAllGapCadence


retrievePartialGapCadence


retrieveAllGapChannel


retrievePartialGapChannel


retrieveAllGapTarget


retrievePartialGapTarget


testConvertLongCadenceToShortCadence


testConvertShortCadenceToLongCadence


testFileLogCount


testRetrieveTableActualStartStopTimes


testCadenceLogStoreAndRetrieve


testRetrieveAll


testRetrieveAncillaryDictionary


testRetrieveNullDictionary


testGetInstanceWithCacheDisabled


nodeNameFactoryTest


humanReadableMAC


dropTables


testStatistic


createDoubleQuantityWithProvenance


testDoubleQuantityWithProvenance


createBootstrapHistogram


testQuantityWithProvenance


createPlanetModelFit


modelParameterAdd


testPlanetModelFit


createWeakSecondary


createThresholdCrossingEvent


testThresholdCrossingEvent


createImageCentroid


testPlanetStatistic


createPlanetCandidate


testPlanetCandidate


testDelete


testRetrieveSummaryForPipelineInstance


testRetrieveSummaryForLatest


createRollingBandContaminationHistogram


createModelParameterCovariance


createLimbDarkeningModel


createQuantityWithProvenance


testModelParameter


testLimbDarkeningModel


createTargetTableData


testTargetTableData


testSmallFlat


testRetrieveActiveHistory


testRetrieveHistoryByDate


deleteAll


createNullAttitudeAdjustment


createNullModuleOutputMetricReport


createNullFocalPlaneMetricReport


simpleDoubleSeriesOverwrite


testRetrieveReportByPipelineTask


testRetrieveReportByPipelineTaskAndIdentifier


validateReport


isPlanetACandidate


logNanInf


computeCadenceInterval


fixStartEnd


storeSingleResult


populateCache


createRollTimeModel


createFileStoreClient


createAlertService


processTarget


processTargetTable


createFoldedPhaseTimeSeries


createLightCurveTimeSeries


createFluxTimeSeries


retrieveModelParameterValue


createSummaryQualityMetric


createSummaryOverlapMetric


createQualityMetric


createResidualFluxTimeSeries


createSingleEventStatisticsTimeSeries


retrieveTipFile


timeSeriesCount


trapezoidalModelLightCurve


shorterPeriodComparisonStatistic


longerPeriodComparisonStatistic


oddEvenTransitDepthComparisonStatistic


oddEvenTransitEpochComparisonStatistic


singleTransitDepthComparisonStatistic


singleTransitDurationComparisonStatistic


singleTransitEpochComparisonStatistic


clearTimeSeries


correctedFluxTimeSeries


rawFluxTimeSeries


thresholdCrossingEvent


initialFluxTimeSeries


atLeast


testGetAllTargetTableData


testGetAllTargetTableDataWithAncillaryData


validateAllTargetTableData


mockReadTimeSeriesBatch


createTimeSeriesBatchList


mockTargetTables


createImageFile


mockAncillaryPipelineData


createAncillaryPipelineDataList


mockBackgroundBlobFileSeries


mockMotionBlobFileSeries


mockTransitNameModel


mockTransitParameterModel


createTransitNameModel


createTransitParameterModel


testSerialization


createTimeSeries


validateAncillary


validateCadenceTimes


validateCentroidTimeSeries


validateCorrectedFluxTimeSeries


extractFloatTimeSeries


extractDoubleTimeSeries


validateTargetData


createSimpleFloatTimeSeries


createSingleEventStatistics


testCopy


createValueByFieldMap


retrieveBackgroundBlobFileSeries


validateTargetListSet


validateTargetTable


doesMaskContainAperture


manageTargetTablesAndMaskTables


deleteOldAndCreateNewTargetTable


manage


retrieveFor


copyMaskTable


importMaskTable


checkMaskCount


generateMaskTable


storeFor


retrieveModuleOutputImage


storeMaskData


importAndStoreMaskTable


storeMaskTable


validateMaskTable


storeTargetData


importAndStoreTargetTable


storeTargetTable


storeBackgroundTadData


validateForExport


exportMaskTable


exportTargetTable


testImportMissingTargetWithValidationDisabled


testExportImport


testCreateForFile


testGetFile


testExportMaskTable


testExportTargetTable


testToMask


testManageCreate


testManageDelete


testManageUpdate


testErrorIfNullTargetTable


testProcessTaskWithUnlockedTargetListSet


notLocked


noBackgroundTable


maskDoesNotContainAperture


customTargetWithNullAperture


testProcessTaskWithLongCadenceCustomTarget


testRealisticAperture


testStoreFor


testProcessTaskWithSourceFile


testProcessTaskWithSourceTargetListSet


testProcessTaskWithShortCadenceTargetListSet


testRetrieveFor


testProcessTaskWithLongCadenceTargetListSet


testProcessTaskWithNullImage


testValidateStellarHaloConsistent


testValidateStellarHaloInconsistent


testValidateStellarUndershootConsistent


testValidateStellarUndershootInconsistent


testValidateCustomHaloConsistent


testValidateCUSTOMHaloInconsistent


testValidateCUSTOMUndershootConsistent


testValidateCUSTOMUndershootInconsistent


testProcessTaskWithNullAperture


testProcessTaskWithLargeMaskIndex


testCopyMaskTable


testGetValueSetValue


parseStartEndTime


parseCadence


parseModuleOutput


expectIdParameter


parseId


expectGenericReportIdentifierParameter


parseGenericReportIdentifier


parseSortBy


parseSortOrder


createGuestUser


createUser


findUser


fireUserLoggedOut


fireUserLoggedIn


isInGroup


putAll


safePut


displayError


capitalize


clearTree


addChildNode


toName


removeNodeByName


deleteNodeIfNoPermission


dataSource


codeWordLengthFrequencyDataSource


pipelineInstanceDataSource


totalTaskCount


targetTableDataSource


backgroundTableDataSource


targetListSetDataSource


targetListDataSource


targetListData


targetCount


targetTableTargetCountDataSource


backgroundTableTargetCountDataSource


targetCountDataSource


targetTableLabelCountDataSource


backgroundTableLabelCountDataSource


labelCountDataSource


mostRecentOnly


receiveLogDataSource


duration


makeReport


createJasperReport


fillAndExportReport


serveFile


serveStream


contentTypeFromExtension


bufferSizeFromContentType


loadAll


seedPipeline


seedDataReceipt


createDispatchLog


randomMessage


randomAlert


testLogin


testFailureLogin


testViewSoHome


testFailureViewSoHome


addTestFile


testRequestParameter


testExpectTimeParameterNoParameter


testExpectTimeParameterEmptyParameter


testExpectTimeParameterInvalidDate


testExpectTimeParameterNormal


testExpectTimeParameterRelaxed


testExpectModuleOutputParameterEmptyParameter


testExpectModuleOutputParameterInvalidModuleOutput


testExpectModuleOutputParameterInvalidModule


testExpectModuleOutputParameterInvalidOutput


testExpectModuleOutputParameter


testExpectGenericReportIdentifierParameterInvalidString


testExpectGenericReportIdentifierParameterInvalidPipeline


testExpectGenericReportIdentifierParameter


testExpectGenericReportIdentifierParameterNoIdentifier


testSetWarningText


testSetErrorText


testGenericReportGeneration


testCreateGroup


testFindUser


testAuthenticator


testUserAuthenticate


testUserPut


testUserPutAll


testUserGetCreationDate


testFirstName


testLastName


testGetUserName


testPiUser


testVirtual


testPropertyContainer


testSeed


assertReportPermission


assertEditorPermission


testAddPermission


testGetCreationDate


testTotalTaskCount


testTaskCountWithNullState


testTaskCountWithUnknownState


testTaskCount


testGapFacadeCompareTo


testGetRequestParameter


testWarningText


testErrorText


testWrappingInvocationHandlerSerialization


testValueOfStringArray


testValueOfList


testFormat


testComma


testAnd


testAsciiCleanWriter


invokerTransformerTest


testSingle


testMultipleFlat


createCompoundPatternNull


createCompoundPatternEmpty


createCompoundPatternSingle


createCompoundPatternMultiple


findAndReplaceTextSimple


findAndReplaceTextReverse


findAndReplace


findAndReplaceReverse


findAndUpdate


testParseIllegalString


testBinPacker


testInvalidTarget


testGetContentType


testGetFileExtension


testValueOfContentType


testValueOfExtension


buildBasicHeader


buildBinaryTable


differInHeader


safeAddTest


addEmpty


formatCardWithFloatingPoint


dontFormatDoubleNaN


dontFormatFloatNaN


dontFormatFloatInf


dontFormatDoubleInf


dontFormatDoubleNegativeInf


dontFormatFloatNegativeInf


formatNullHeaderCard


testAdvanceToEndOfHeader


testFinite


sortedMapSortedKeySetTest


generateListData


testIncludedWithIncludedChannel


testIncludedWithInvalidChannelGroup


testIncludedWithValidAndInvalidChannelGroup


testIncludedWithOneChannelGroup


included


testBasicWrite


testFullContainerWrite


testTimeSeriesContainerWrite


testSimpleContainerWrite


testBlobFileSeries


testPairContainer


writeMatFile


testToStringForString


testToStringForStringWithStartEqualEnd


testForStringWithTrailingSeparator


testForStringWithSpaceAfterSeparator


testKill


startTestProcess


findMountedFileSystemTest


reportAndFixTest


parseCommandLineTest


mergeSimpleDoubleInterval


mergeIntoEmptyDoubleIntervalSet


mergeBeforeAndAfterDoubleIntervalSet


mergeOverlapDoubleIntervalSet


mergeSubset


fuzzyMergeBeforeAndAfter


singleCadenceBlobTest


blobInTheMiddle


blobDataForCadenceBlob


extractBlobData


singleCadenceDataTest


dataInTheMiddle


dataForCadenceData


duplicateCadenceData


fileExtentMapTest


zeroLengthFileTest


filterDirectoryCopyEmpty


filterCopy


testConvertFloatArrayToString


testConvertStringToFloatArray


actorProducerConsumerTest


passOnError


testServerLock


printClass


classForName


printField


isPrimitiveField


buildNode


formatField


typeToString


headSet


subSet


tailSet


insertChildAt


valueOfContentType


valueOfFileExtension


formatCard


formatNullStringHeader


safeGetFloatField


safeGetStringField


safeGetIntegerField


safeGetDoubleField


manufactureBinaryTableHeader


formComment


insertComment


trimHeader


copyHeader


headerToString


addPolynomial


advanceToEndOfHeader


buildIndex


scanClassPath


scanDirectory


scanJar


createClassFile


parseClassPath


rotationAndScale


isBranch


findAndReplaceText


findAndReplaceAll


createCompoundPattern


valueOfName


valueOfFileNameSuffix


isPrintableNonAscii


dateFormat


buildMap


indentString


validRowOrColumnOffset


stackPush


stackPop


innermostComponentClass


typeForClass


generateDataDictionary


blobSeriesForCadenceInterval


blobForCadence


cadenceDataForInterval


dataSeriesForCadenceInterval


coveringData


isLessThanOrSame


isGreaterThanOrSame


dataForCadence


deNullify


populatePropertySheet


editArray


selectNull


asArray


asStringList


insertElementAt


primitiveToWrapper


wrapperToPrimitive


findParentWindow


importArray


exportArray


forString


initializeFileWithSize


findRoot


addSize


copySparseFile


topDownCheck


dotReportString


fileSystemDeviceName


parseName


extractChannelGroup


checkLogin


createTaskService


createMenu


action


targetManagement


tableExport


restoreView


addPanel


removePanel


addMenu


removeMenu


createVerticalSeparator


createOptionPanePanel


createProgressBar


createMessageArea


unblock


conditionalHelp


warnUser


stripDefaultActionChar


updateMessageArea


displayHelp


createTextComponent


textWidth


scaleIcon


configureDefaultAction


adjustSelection


createDefaultTableHeader


isHideFalseIcon


isHideTrueIcon


initializeTargetListSet


ingestTargetFile


targetToString


skyGroupIdFor


skyGroupFor


viewTargetList


duplicate


openTargetListCheck


updateTableData


updateUsedByColumn


usedBy


columnOf


addOrUpdate


updateCountColumn


handleFatalError


nextDate


panelSize


startMarquee


updateMarquee


marqueeToMask


drawMarquee


unlock


lockedCount


updateTotal


addConstraint


updateConstraint


removeConstraint


ensureConjunctionUseful


ensureFirstConjunctionNone


recalculate


browse


importTargetList


handleNonFatalError


lookUp


addLabel


updateLabel


removeLabel


applyLabel


userDefinedAperture


moveApertureReference


validReferenceRow


validReferenceColumn


clearAll


selectAll


saveToLocal


readyForNext


readyToExport


convertStartTime


sameMaskTable


completeExportSet


updateTableTypeMap


saveTargetTables


createNewName


readFileAsList


isDecimal


seedTargetSelection


seedSecurity


testCreateTargetList


testCreateTargetListSet


testCreateTargetTable


testCreateMaskTable


testTargetToString


testSetProgressHandler


testGetCategory


testGetInstance


testReadFileAsList


fillTest


testUnlockedTargetListSet


createDoubleTimeSeries


mockTargetTable


mockTargetTableLog


mockReadFloatTimeSeries


mockReadDoubleTimeSeries


mockWriteFloatTimeSeries


mockWriteTimeSeries


mockCreateAttitudeSolution


mockRetrieveAttitudeSolution


createBlobFile


mockMotionBlobFile


mockBackgroundBlobFile


mockPaUncertaintyBlobFile


mockDataAccountabilityTrail


mockAlert


mockCadenceTimes


mockSkyGroupId


mockAncillaryEngineeringData


mockSaturationModel


mockGainModel


mockLinearityModel


mockReadNoiseModel


mockUndershootModel


mockGenericReport


mockTipBlob


testSameTypeWriteReadWriteRead


testSameTypeWriteWriteReadRead


testGetValue


testGetValueWithObservingLogQuarterMissingFromInputQuarters


testGetValueWithListOfQuarters


testGetValueWithRangeOfQuarters


parseTargetDefinition


testCheckWithNullModelRegistry


testCheckInternal


completelyEmptyTimeStampSeries


convertSimpleBlobSeries


convertBlobSeries


createCadenceTimes


createBlobFileSeries


testTrimForDifferentChannel


testTrimDeadCadenceWithOneChannelBeforeStartCadence


testTrimDeadCadenceWithOneChannelAfterStartCadence


testTrimDeadCadenceWithOneChannelBeforeEndCadence


testTrimDeadCadenceWithOneChannelAfterEndCadence


taskListOf


taskOf


testSingleTableMatchingCadenceRange


testSingleTableDifferentCadenceRange


testMultipleTableMatchingCadenceRange


testMultipleTableDifferentCadenceRange


testMultipleTableMatchingCadenceRangeOutOfOrder


testNoTableMatchingCadenceRange


testExcludeSingleCadenceAtStartOfTargetTable


testSubdivide


testSubdivideWithNullChannelGroup


testSubdivideWithOneChannelGroup


testSubDivide


testSubdivideWithBinningDisabledAndMinimumDisabled


testGetChannelString


testMultiple


chunkTargetListTest


testSubdivideSameSkyGroup


targetTableForTargetTableId


testNoBinning


ancillaryPipelineData


translateConstantToAcronymName


translateConstantToCamelName


invalidTargetTableType


invalidRow


invalidColumn


invalidTarget


invalidRowOrColumn


testGetReportId


testGetReportIdWithIdentifier


rollingBandFlagTest


createSingleEventStatisticsQuery


testCall


serializeAllToFile


serializeModelToFile


testList


testToAperture


actualFileNull


actualNotDirectory


testNullMimeType


testMimeType


testCreateReportWithKnownFile


testCreateReportWithIdentifier


testCreateReportWithKnownType


testRetrieveReportBogusPipelineTaskId


testRetrieveReportBogusIdentifier


testInputStreamNullBogusReport


testRetrieveBlobResult


testRetrieveReport


createBlob


createBlobWithIdentifier


weakSecondaryTimeSeriesTest


createAncillaryEngineeringDataList


createAncillaryPipelineTimeSeries


testInvalidMnemonic


testRetrieveAncillaryEngineeringData


testRetrieveAncillaryPipelineTimeSeries


testAncillaryEngineeringDataOutOfOrder


testSingleImportAndRetrieve


testMultipleImportAndRetrieve


testCelestialObjectParameter


testUpdateWithNullCelestialObject


testUpdateInternal


createCelestialObjectParameter


testCreateForValueWithValueNull


testCreateForValueWithValueNotNull


testCreateForValueUncertaintyWithUncertaintyNull


testCreateForValueUncertaintyWithUncertaintyNotNull


testRetrieveCelestialObjectInternal


testFilter


testGetInstanceWithNullCelestialObject


testGetInstanceInternal


applyUncertaintyOffset


longCadenceTable


humanString


toFilledTimeSeries


returnDoubleOrDefault


returnFloatOrDefault


toFloatArray


toDoubleArray


toFloatTimeSeries


toDoubleTimeSeries


addToDataAccountability


storeAndErase


readCollateralTimeSeries


mimeType


fillInTimeSeries


checkOriginator


retrieveOriginalTargetListSet


storeImage


retrieveLatestEphemerisFile


cacheInterval


cacheMiss


cadenceTimes


resizeTimeSeries


removeDeadChannel


binByChannelGroup


briefState


checkForOutOfOrderTargetTables


addFloatTimeSeries


addDoubleTimeSeries


addRa


addRoll


buildConversionCommand


extractImageRequest


postLoginRequest


generateImageRequestFile


storeAncillaryEngineeringData


storeAncillaryPipelineData


updateCelestialObject


retrieveCelestialObject


parseHeader


printCompletenessPercentage


blobDataForSkyGroup


retrieveDynamicTwoDBlackBlobFileSeries


retrieveSmearBlobFileSeries


retrieveCalOneDBlackFitBlobFileSeries


retrieveTipBlobFile


retrieveBackgroundBlobSeries


retrieveMotionBlobSeries


retrieveDynamicTwoDBlackBlobSeries


retrieveCalBlobSeries


retrieveTipBlobData


longToShortCadenceBlobSeries


blobDataForTargetBlob


blobDataForSkyGroupBlob


blobDataForTarget


createComment


createSkyGroupTable


seasonRotatedModuleNumber


updateSkyGroupIdCache


retrieveCustomTargetMap


stringToTarget


createSkyGroupMap


generateModuleOutputSeasonKey


generateIdSeasonKey


sumFileSizes


validateManifest


fileSet


extractCategory


readLongCadenceFile


generateTestData


writeTarget


targetCheck


testLoadSeedData


testProgress


testOneCategory


ingestSameCustomTargetWithFirstMissingAperture


ingestSameCustomTargetWithSecondMissingAperture


testBlankLine


ingestTargetFileNotForImport


createTargetListFile


populateSkyGroupTable


testSkyGroupIdFor


testSkyGroupFor


testStringToTargetCustomMissingSkyGroupId


testStringToTarget


testNonExistentDirectory


testEmptyDirectory


testLineNoise


testValidateManifest


findNonExistentDirectory


createEmptyDirectory


testReplace


testAppend


testOneList


testCategoryGiven


testCategoryNotGiven


testOneEmptyListAndOneNonEmptyList


checkComment


moduleName


testSkyGroupGen


storeConvergence


retrieveTimeSeries


storeMotionPolyBlob


saveBlob


fileExtension


blobFile


retrieveGeometryBlobData


createFileStore


processTaskTest


forceMultipleTables


createBackgroundBlobSeries


createMotionBlobSeries


createMotionPolyBlob


legend


splitDirectory


parsePrefix


parseFirstNumber


distinctOriginator


quarterToObservingLog


meanBlackValue


readNoiseE


gainE


dataAnomalyTypeToFlagType


createQualityColumn


exportFile


fetchFileStoreStuff


typeCorrectedTimeSeries


targetTime


addTimeSeriesTo


discontinuityTimeSeries


referenceCadence


findGoodCadence


fluxCentroidTimeSeries


longReferenceCadence


rowColumnCentroid


createOutputDirectory


nullableFloat


nullableInteger


nullableString


nullableDouble


addModuleOutput


imageFor


fetchNext


fillInMissingData


transformationMatrix


raScale


formatApertureMask


barycentricCorrectionSeries


actualStartAndEnd


skyGroup


exportForTime


longCadenceTimes


calculateBackgroundFlux


calculateBarycentricCorrection


executor


fromAllTimeSeries


filterBySet


lengthOfTask


targetTableExternalId


addDataProduct


calibration


cadenceToLongCadence


barycentricCorrection


resolveTestPulseDurationConflict


fluxThreshold


barycentricCorrectionStartOfFirstCadence


barycentricCorrectionEndOfLastCadence


correctedUnfilledFlux


unfill


resizeSeries


timeCorrectionSeries


uniqueValue


blackAlgorithm


buildImage


convertToDouble


positionCorrectionFilter


filterAxis


apertureCentroid


dataValidationTimeSeriesName


dataValidationReportSummaryName


combinedFlatField


fluxSuffix


characteristicName


dataSetName


cosmicRayName


isCosmicRayName


isFluxName


collateralName


addBinaryTableColumn


minCadence


addTo


backgroundPolynomial


unpackBackgroundPolynomial


createOutputFileStream


createBackgroundHeaderSource


writeBackground


writePolynomial


writePrimaryHeader


createPrimaryHeaderSource


makeReportSummary


extractData


organizeData


modelLightCurve


singleEventStatistics


writeFileUnsafe


createBinaryTableHeaderSource


writeStatisticsData


createOutputStream


checkExport


unfillTimeSeries


identityNotNull


createBinaryTable


createPrimaryHeader


createExtensionHeader


background


fileName


fillNullImage


createBinaryTableHeader


extractSeries


rollingBandVariation


createFileName


writeCollateralData


createExporterSource


binaryTableData


headerSource


mapOrder


assemble


createOutputFile


primaryHeaderSource


createAssemblerSource


targetData


correctedUnFilledFlux


paFluxTimeSeries


fillTimeSeries


writeTableData


createBasePrimaryHeaderSource


allTo


padBinaryTableData


newImageWriter


createImageData


writeSingleCadenceImage


sizeOf


basicBinaryTableHeader


writeOutImage


formatImageHeader


createFragmentGeneratorSource


generateFragment


fileStoreOutputStream


generateTimes


generateTemporaryPrimaryHeader


createImageHeaderSource


barycentricCorrectionReferenceRow


barycentricCorrectionReferenceColumn


meanBlack


targetAndApertureMapKey


pipelineTaskStartEndTimes


applyCosmicRayCorrection


makeKey


fromCadenceValue


createCosmicRayFile


targetTableType


addSingleEntry


exportOneBlob


blackAlgorithmToString


writeBlobSeries


extractQuarterArgument


extractDataReleaseNumberArgument


extractTimeStampArgument


extractOutputDirectoryArgument


quarterToCadenceRange


assign


removeSecondaryBases


processEntry


categoryString


createActualMap


createOrderMap


orderForExternalId


actualStartTime


actualStopTime


compareActualTimes


printEntry


parseInstance


parseCommandLine


investigationIdVerify


backgroundToMap


barycentricCorrectionToMap


calculateBackground


convertBackgroundPolynomial


clearHibernateCache


addFile


findGammaTransferParameter


generateVideoStatistics


parseDate


directorySplitTest


createMinimalCelestialObject


testCombinedFlatFieldExporter


testQualityFlagCalculator


generateFlagTimeSeries


generateDataAnomaly


testDate


testYearEnd


generateThrusterFiringTimeSeries


generateFloatTimeSeries


generateDoubleTimeSeries


apertureMaskHeaderTest


generateRandomFile


middleIsGood


lowerReferenceCadence


upperReferenceCadence


testGetPipelineInstanceIdInternal


shortToLongTest


fillValueForCadence


createHeaderBlobResult


testCorrectedUnfilledFlux


resizeSeriesUnTouched


resizeSeriesTruncateStart


resizeSeriesTruncateEnd


resizeSeriesPadStart


resizeSeriesPadEnd


resizeSeriesUnTouchedDouble


resizeSeriesTruncateStartDouble


resizeSeriesTruncateEndDouble


resizeSeriesPadStartDouble


resizeSeriesPadEndDouble


generateDoubleTestSeries


generateTestSeries


barycentricCorrectionStartOfFirstCadenceTest


failBarycentricCorrectionStartOfFirstCadenceTest


barycentricCorrectionEndOfLastCadenceTest


failBarycentricCorrectionEndOfLastCadenceTest


uniqueTimeSeriesValueTest


uniqueTimeSeriesTestFail


generateCharacteristicForType


generateCharacteristicType


testLengthOfTask


runWithAssigned


tagFluxFile


example


testYearStart


qualityAndCentroidRelated


rollingBandFlagTimeSeries


apertureMaskImageBuilderTest


testMap


generateCollateralCosmicRayModuleOutput


readWriteVisibleCosmicRayFile


readWriteCollateralCosmicRayFile


createAccountability


makeCadenceLog


storeTimeSeries


fillRandom


testEmptyExtraction


noMatchTest


singleInvestigationTest


primaryWithSecondary


testParseActualTimesBothNull


testParseActualStartIsNull


checkOutputFile


populateTargetTable


minValue


generateDate


checkConversionToLongCadence


checkErasedOptimalAperture


exposureCalculator


generateImageHeader


generatePrimaryHeader


extractAndCheck


writeImageHeader


createSource


generateTimeSeries


testPlanetarySystemTimeSeries


testTimeSeriesExporter


testTimeSeriesExporterPipelineModule


populateByPipelineInstance


fillAll


backgroundBinaryTableHeader


createBarycentricCorrection


unprocessedCount


unprocessedTimes


initialProcessTask


oneModuleOutput


allButOneModuleOutput


reportDisabled


excludeInvalidCadence


excludeNewUnprocessedCadence


executeAlgorithmDisabled


validateOutputMetrics


createFocalPlaneReport


exportToNonexistentPath


exportToFilePath


exportNull


validateAttitudeAdjustment


assertReadableDirectory


configureAft


cacheTablesInSchema


removeStaleCacheIndicesFromSchema


updateSchema


createFindPattern


assertWritableDirectory


seedSpice


nextContact


seedNextTestData


createDispatcher


createHandler


shutdownExecutor


importGapReport


exportGapReport


processException


taskIncluded


workerIncluded


generateTriggerFile


closeAll


waitForPipelineCompletion


approve


cleanSmokeTest


isMet


retrieveSaturation


loadBin


retrieveBlobSeries


listTimeSeries


mnemonics


runListing


coerceToFormatStringType


dateToSkyGroupId


retrieveAncillaryData


retrieveAllMnemonics


retrieveTargetTimeSeries


retrieveSingleChannelTimeSeries


putDataInTargetContainer


saveMat


retrieveTad


retrieveTargetData


retrieveMar


retrieveReceivedFile


retrieveReceivedFileData


findPipelineDefinitionNodeWithName


generateTargetDataList


retrieveQuarter


compressCadenceData


originatorForCadenceData


version


addTargetListSet


extractDiscontinuityOutlier


extractGoodnessMetric


indicesToTimeSeries


directoryReadable


fileReadable


extractBinaryTable


extractAperture


extractSimpleTimeSeries


extractCompoundTimeSeries


extractCompoundDoubleTimeSeries


extractSimpleDoubleTimeSeries


validateTimes


calculateTimes


resizeSimpleTimeSeries


resizeCompoundTimeSeries


resizeCompoundDoubleTimeSeries


resizeSimpleDoubleTimeSeries


mergeSimple


mergeCompound


mergeDouble


convertCorrectedTimeSeries


extractTimeCorrection


extractReactionWheelZeroCrossingIndices


isMember


createFileByCadenceAndTypeMap


findModuleOutputTable


extractCosmicRayTable


extractCadenceOffset


extractQuality


extractCadenceSlice


extractSmearTimeSeriesCadenceSlice


extractBlackResidualCadenceSlice


extractSingleResidualCadenceSlice


convertTimes


validateIn


validateOut


extractStartCadence


extractPrimaryHeader


displaySummary


extractTargetTable


extractMaskTable


extractTadReport


extractTimeSimpleDoubleTimeSeries


validateSimpleTimeSeries


validateCompoundTimeSeries


convertCompoundTimeSeries


validateCompoundDoubleTimeSeries


extractTransitNameModelDescription


extractTransitParameterModelDescription


validateTimeSeries


processSimpleTimeSeries


processCompoundTimeSeries


convertPlanetModelFit


convertPlanetStatistic


convertStatistic


convertSummaryQualityMetric


convertSummaryOverlapMetric


convertDoubleQuantity


convertQuantity


convertQualityMetric


convertPlanetCandidate


convertWeakSecondary


convertBootstrapHistogram


convertFloatArray


convertLimbDarkeningModel


convertRollingBandContaminationHistogram


populateModel


addModuleName


generateSummary


addMatch


renderTableBegin


renderTableRow


launchNextPipeline


createPseudoTargetList


deleteTargetListSet


forceIncluded


loadTargetListSet


storeMaskTableFile


importObservingLogModel


importTransitParameterModel


importTransitNameModel


testFilterWithPipelineTaskNotMatchingFilter


testIsMet


testClassesExist


testIsValid


targetListSplitterTest


testRetrieveAncillaryEngineering


testRetrieveAncillaryPipeline


testRetrieveBackgroundForShortCadence


testRetrieveEndCadenceLessThanStartCadence


testRetrieveInternal


testConvert


mailReport


testIncludedWithIncludeList


testIncludedWithExcludeList


testFilterWithAll


testFilterWithEmptyList


createPipelineSeedData


testInvalidTargetListSetName


testInvalidTriggerName


testInvalidTargetTypeForModule


testVersionInvalidTriggerName


testTrim


createDataProcessor


testExportData


createTargetDefinition


testImportExportGapReport


testImportExportParameterLibrary


testReadCommentLine


testApplyFor


baseInvestigation


testGenerate


testGenerateWithCollaboratorWithSameLastNameButDifferentFirstName


testGenerateInternal


testApplyForBaseInvestigation


testApplyWithActualEndLater


testApplyWithNullActualEnd


testApply


testApplyInternal


testWriteInternal


testApplyWithNullActualStart


testApplyForJointInvestigation


testFormatOneElement


validityCheck


preferredLayoutSize


layoutContainer


dismissAll


doAgeCheck


removeIndicator


enableHandlerThread


addAlertMessage


addMetric


updateWindow


asTimeSeries


triggerByName


reloadModel


recordExpansionState


applyExpansionState


doGroup


showTaskLog


refreshContents


updateFilter


resetTimer


showReport


selectParameterSet


doSelect


showParameterSet


initializeCache


deletePipelineNode


saveRole


deleteRole


saveUser


deleteUser


addDataAnomaly


deleteDataAnomaly


evict


treeExpanded


treeSelectionEvent


displayPipelinePanel


displayUserPanel


displayRolePanel


displayModuleLibraryPanel


displayKeyValuePanel


selectParamSet


appendToReport


selectParameterClass


doNew


doClone


doRename


doRefresh


doDelete


updateUser


doVersion


redraw


drawPipeline


drawArrow


doInsertBefore


doInsertAfter


doInsertBranch


initializeList


selectGroup


addNewDataAnomaly


scanFully


addGroup


sendRequest


appendBold


appendColor


appendSizeModifier


showLogin


closeConsumer


closeProducer


createConnectionFactory


createSession


requestNoWait


dumpQueueState


waitForReadyToProcess


initializeReceiver


closeConsumerForThread


closeProducerForThread


closeSessionForThread


createQueueBrowser


sendInternal


createPump


createSystemInPump


validateLogin


insertAll


waitFor


registerProcess


deRegisterProcess


isProcessAlive


processStatus


updateMemoryMetrics


addStatusReporter


sendUpdate


createSelector


updateProcessState


addProcessStatusReporter


metricTypeSwitch


processPoll


parseDisk


nAboveThreshold


newSample


processMetric


readyForReceive


testInitialize


testGetSessionForThread


testQueueReceiveNoWait


testTopicReceiveNoWait


testQueueReceiveWait


testTopicReceiveWait


testQueueRequest


testTopicRequest


testRollbackTransaction


testRequestWithMatchingSelector


testRequestWithNonMatchingSelector


testRequest


createQueue


testSystemProperty


testDefaultFileProperty


testValidateLogin


testGetCurrentUser


assertMetricValue


testStoreMetric


testAlertService


verifyAlert


oracleDistributedTransactionTest


testPause


testResume


testShutdown


testRestart


testNormalSyncRun


testAbort


testLogToMyWriter


testLogToInternalStringWriter


testBroadcaster


createMetricTimeSeries


copyTimeSeries


mockCosmicRayMetrics


singleBatchSingleRead


paFluxTarget


paTarget


processLongCadenceSet


processShortCadenceSet


createPaTarget


nextBatch


refillCache


createCosmicRaySeries


storeBackgroundBlob


storeMotionBlob


storeUncertaintyBlob


storeCosmicRayMetrics


storeTargetTimeSeries


storeMetricTimeSeries


generateSequence


initializeTargetTable


initializeTargetTableFromSet


processCadenceSet


constructBlob


storeBlob


cadenceType


storeCompression


storeCosmicRaySeries


quarterToParameterValueMap


figureOutTargetTables


toFileStoreTimeSeries


createLongCadenceCollateral


createShortCadenceCollateral


createTargetAndBackground


collateral


extractSubImage


findDuplicateCalCollateralCosmicRay


testCollateralWorkParticleMissingData


testIsEmpty


testCollateralWorkParticle


createLinearityModel


createTwoDBlackModel


createFlatFieldModel


targetAndBackgroundWorkParticle


calPipelineModuleTest


createCalWorkParticleFactory


storeCollateral


storePhotometric


cosmicRayMetrics


calCosmicRayMetrics


collateralMetrics


generateFor


testWorkParticleFactory


toHibernate


isHeadless


synthesizeMouse


synthesizeMouseWheel


handleKeyStroke


lowerKey


higherKey


nearestKey


optParse


canImport


transferData


createFrame


toolButton


toolToggleButton


createNewToolBar


recreate


unsetMovie


checkSanity


clickRecordButton


updateMovieSpeed


addLeftSpacer


addRightSpacer


updateLayout


lazyRepaint


paintThumb


paintTrack


moveForward


moveBack


createShiftMenu


resizeSelectionPanel


changeDisplayMode


updateDateDisplay


fillGrid


resizeTableRowHeight


resizeTableColumnWidth


formatR


refreshMenu


installMouseWheelSupport


incrementAngle


doPaint


tableValueAtPoint


createButtonPanel


createBannerPanel


createContentPanel


displayNode


adaptRequestCache


splitInterval


readGimpGradient


readColors


attachShader


initializeProgram


copyImageBuffer


renderShape


putRectLine


bindScreen


bindDisplay


reshape


renderScene


renderSceneScale


renderFullFloatScene


drawVertex


renderTexture


streamImage


applyLUT


ensureColor


repeatVertex


drawTextFloat


renderFrame


beginRendering


endRendering


beginMovement


endMovement


clearCacheEntry


drawVertices


markDirty


insertEventTypeIfNotExist


insertVoidEvent


createUniqueList


createSchema


copyNode


reattach


resetRowSelection


onSuccess


submitLoad


detect


toFileRequest


decompressStream


streamToString


diskUsage


unZip


detectProxy


loadRequest


loadView


processCall


parseRequest


transformInverse


toLongitude


reshapeAll


mouseToGrid


toggleActive


loadState


saveState


install


computeBrightColor


findColumn


renderData


drawEvent


drawText


bindTexture


drawPolygon


drawIcon


drawImageScale


drawIconScale


renderScale


renderFullFloat


parseSource


parseGroup


parseEventIcon


parseParameterList


parseParameterFilter


parseRelatedOnList


parseRemote


parseResult


parseRef


parsePolygon


parsePoint


checkAndFixBoundingBox


drawConnectivity


putPointScale


putConnectivity


renderFloat


updateTime


spiralPutVertex


renderSpiral


insertRow


unload


unsetView


handleData


nextTime


relativeTimeAdvance


absoluteTimeAdvance


pause


toggle


nextFrame


previousFrame


syncTime


addTimeListener


addTimeRangeListener


drawGridFlat


drawGridTextFlat


drawRadialGridText


drawGridText


createGridTypeBox


createGridResolutionX


createGridResolutionY


syncViewpoint


addToGridBag


selectTarget


selectElement


changeSelection


createImageOfRow


createTransferable


exportDone


computeRequest


computeRequestPrecise


computePlanet


putStar


putVertex


convertColor


adjustColorsSize


parseInput


createGeometry


createSpinner


zoomSelectedRange


generateScale


moveXAvailableBased


moveAndZoomY


resetAxis


moveAllAxes


createGraphArea


zoomTo


removeData


requestData


computeResolution


fetchData


drawString


drawBackground


drawInterval


drawMovieInterval


drawIntervalHBar


drawLabel


moveSelectedInterval


jumpSelectedInterval


toggleAxisHighlight


redrawGraph


drawMovieLine


drawRequest


addToCache


readBand


longArray


floatArray


verifyResponse


LoaderZIP


readBandData


readEpoch


zoomToFitAxis


updateGraph


minus


createRotation


rotateWithConjugate


twist


rotateVector


rotateInverseVector


nextPowerOfTwo


projectionOrtho


updateCamera


resetDragRotationAxis


computeUpX


computeUpY


zoomToFit


drawLine


computePointSun


drawCircle


drawCross


drawRectangle


interpolateTime


interpolateLatitudinal


interpolateRectangular


computeTable


toQuat


zComputeSigma


zFitLine


sendDataToHandler


readImageBuffer


sampleImage


readLUT


computeHash


abolish


incrementSerial


signalReader


executeDecode


createCompositor


destroyCompositor


extractMetaData


isComplete


waitForSignal


readSegment


writeRequest


readAsciiLine


disposeMovieWriter


handleMovieExport


scaleImage


medianStream


computeHorizontal


computeVertical


gaussNorm


copyImage


createIndexed


isInterrupted


afterExecute


invokeAndWait


shutdownOnDisposal


roiToRegion


retrieveSector


retrieveUnit


retrieveResponse


retrieveOcculterLinearCutOff


retrieveOcculterRadii


identifyObservation


retrieveTime


adjustTime


retrievePosition


findEvent


swapEvent


resetTime


beautifyValue


requestForInterval


checkAssociation


addAssociation


removeSupplier


addParameter


parameterFromList


workerFinished


activateSupplier


generateFlareSpinner


createFilterPanel


addFilter


createEventPanel


repack


addLineToSummaryPanel


testAddMerge


testExclude


testExpand


validateCollectionRate


fromHarmonics


detectReality


randomReal


fromMap


reconstructHarmonics


testBinarySearch


testGetBinaryFileLength


testReadString


testReadBinary


readBinary


removeRun


createNewTimeInterval


addInterval


loadRunList


initializeRunList


historySegmentRemoved


updateFootprint


ingestMetaKernelToCache


percentageLoaded


loadStateHistoryFromFile


saveStateToFile


addRunToList


removeRunFromList


addRun


addState


addStateAtTime


reloadPointingProvider


interpolateDouble


buildHistory


updateTrajectoryAndStateWithPointing


buildPointingProvider


addCollection


removeCollection


isShowing


addImageToList


showDetailedScheduleFor


addTrack


addSpectrumToList


refreshModel


deleteKernelSet


updateDefaultRange


updateRange


doUpdateColorPanel


clearTable


formMenuItem


updateStateHistory


isVisible


isLabelVisible


createTrajectoryPolyData


updateTrajectorySpan


showTrajectory


updateRun


refreshColoring


makeFrustum


makeFootprint


updateTimeBarValue


updateTimeBarLocation


updateStatusBarValue


updateStatusBarLocation


updateLookDirection


installCustomColorProvider


clearCustomColor


updateSunPosition


updateEarthPosition


updateFootprintPointing


updateStatusBarPosition


updateTimeBarPosition


updateSource


registerInstrument


initializeIntervalSelectionPanel


updateButtonState


updateDisplayedTimeRange


initializeIntervalGenerationPanel


initializeIntervalPlaybackPanel


toggleToPlay


toggleToPause


createTimer


saveAnimation


renderView


updateSyncState


initializeViewControlPanel


trackAdded


testTreeComputation


testTreeSerialization


testInSourceFragmentation


testAdduct


testBottomUpElementFilter


enableAutomaticElementDetection


makeComputeJob


simulateIsotopePattern


extractedIsotopePattern


resolveAdductIfPossible


isValidNeutralFormula


addAnnotation


reRankBy


rankBy


createNewProjectSpace


makeZipProjectSpace


createTemporaryProjectSpace


copyProject


isZipProjectSpace


writeToProjectSpace


readFromProjectSpace


deleteFromProjectSpace


textFile


binaryFile


table


inDirectory


withReadLock


withWriteLock


doOnProgress


registerComponent


removeResult


maintainBuffer


relativizeToRoot


resolvePathRaw


resolveCurrentPath


ensureWrite


ensureOpen


reopen


addToZip


resolveAsPath


parseFormat


postVisitDirectory


unFlag


flipFlag


flipFlagRaw


findCompound


newCompoundWithUniqueId


newUniqueCompoundId


newFormulaResultWithUniqueId


tryCreateCompoundContainer


updateCompoundContainerID


writeCompoundContainerID


updateFormulaResult


deleteFromFormulaResult


deleteFormulaResult


updateCompound


deleteCompound


renameCompound


updateContainer


deleteFromContainer


deleteProjectSpaceProperty


withAllWriteLockedDo


withAllWriteLockedDoRaw


withAllReadLockedDo


withAllReadLockedDoRaw


changeLocation


makeSummarizerJob


withSpectralMatchingCache


changeComputeStateOfCache


disableImportListener


enableImportListener


disableProjectListener


enableProjectListener


disableComputeListener


enableComputeListener


compactWithLoading


compact


makeStringRepresentation


createListPanel


runOrGet


isWarningOnly


toLinks


addLinkToLoginError


refreshPanel


createResultPanel


dragEnter


dragOver


dragExit


componentShown


updateLastKnownScreenDevice


colorByActiveFilter


makeAdductToggleSwitch


makeQualityToggleSwitch


resetFilter


selectInstanceByFeatureId


decorateElementCounter


createCommunityPanel


quickStartButton


matrixButton


bugReportButton


button


updatePanel


connectionCheckPanel


accountPanel


showSpectralMatchingTab


showHomologueSeriesTab


removeNotify


annotateSubstructure


findCorrectPeakInInputFragmentationSpectrum


renderImage


updateScoreLabel


clickOnMore


calculateAgreementIndex


indexAt


initializeMolecule


initializeQuery


configureFiltering


adjustFontSizeToFitText


textColor


borderColor


highlightInBackground


highlightFingerprint


parseAndPrepare


makeSourceCandidate


changeData


reloadList


updateContent


runImportJob


saveDoNotAskMeAgain


asParameterList


convertToSequenceStep


makeTransformationBox


updateIterationSpinner


checkName


createImportButton


reloadData


loadNextPage


enableElementSelection


makeParameterSpinner


makeParameterCheckBox


makeParameterTextField


isSelectionEqual


createPanel


makeGenericOptionSpinner


makeGenericOptionCheckBox


addAdvancedParameter


decorateButtonPanel


makeJobSubmission


presetFreeze


presetUnfreeze


activatePreset


processConnectionCheck


makeAdvancedModeToggle


makePresetPanel


stripExtension


updateConnectionBanner


savePresetAs


selectPreset


INSTANCE


createJobManagerPanel


warnNoMethodIsSelected


warnNoAdductSelected


addToolDependency


createElementFilterPanel


addStrategyChangeListener


runInBackground


checkProfile


textContent


updateAvailableContent


registerToTable


refill


readDataByConsumer


readDataByFunction


paintBorder


addSection


specifyColor


onLoadingStateChange


onBeforeBrowse


executeReplaceableDataUpdate


submitReplaceableDataUpdate


openProjectByID


openNewWindowQuestion


ensureUniqueProjectId


createProject


importOneExperimentPerLocation


openProject


createAndAddListener


description


makeRoundedCorner


generateColors


desaturate


adjustLookAndFeel


asHex


addLayoutComponent


minimumLayoutSize


layoutContainerHorizontally


layoutContainerVertically


allocateRelativeSpace


adjustForRounding


adjustFirst


adjustLast


adjustEqual


shouldYieldFocus


modifyIfError


paintDropImage


configureTButton


drawListStatusElement


assignParameterToolTip


formatAndStripToolTip


formatToolTip


closeOnEscape


addQuality


removeQuality


resetRow


addVerticalGlue


refreshText


computeMinSize


configureList


uncheckAll


forEachListItem


executeMatcherEventQueueRunnable


timingEvent


runEventSelected


runEventAnimated


createImageShadow


createShadow


createColorModelCompatibleImage


createCompatibleImage


createCompatibleTranslucentImage


loadCompatibleImage


toCompatibleImage


createThumbnailFast


createThumbnail


ensureBorderPainted


isVisibleOnScreen


resetHighlight


recursiveTraverse


removeLayoutComponent


checkLayout


first


showDefaultComponent


makeProgressBar


runInBackgroundAndLoad


copyPlainText


decorateBodyPanel


applyToModel


makeSpinner


decorate


shrinkToSize


createOnDemandLoggingPanel


createContext


paintLowerThumb


paintUpperThumb


moveLowerThumb


moveUpperThumb


calculateThumbLocation


calculateLowerThumbLocation


calculateUpperThumbLocation


createThumbImage


createIndicatorImage


scrollByBlock


scrollByUnit


testRandom


testSingleWrite


addCompound


computeTestKernel


computeTrainKernel


useEveryXCompound


computeKernel


makeExplicitMap


atomHash


compareLinear


circularIterate


excavateMolecule


recursiveRingFind


rubricTetrahedral


determineDonor


determineAcceptor


determinePositive


determineNegative


appendInteger


findBond


isNaN


generateTargetMatrix


makeFingerprintMatrix


testParseValidFile


testParseInvalidFile


testParseEmptyFile


assertTestSpectrum


testParseSpectrum


testRootArray


unknownAdductTest


cannotParse


testNoRetentionTime


testRetentionTimeRange


parseTest


testCompoundFormula


testForIonType


parseFromFile


readTreeFromFile


writeTreeToFile


withKeyValue


parseRetentionTime


parsePrecursorIonType


parseSpectrum


checkMass


checkMassRange


startQueryFor


toCollectionFormat


parseCE


experimentFromCompound


experimentFromRawCompound


parseCollisionEnergy


parseFeatureId


addNextEntry


readNext


parseSpectra


newCompound


parseOption


flushCompound


parseComment


parseRetentionTimeMiddle


parsePeak


newSpectrum


writeIf


writeIfAvailable


writeToString


writeSimpleMap


writeSimpleEntity


writeSimpleList


parseRoot


sendGetRequest


writeGraph


writeGraphToFile


checkMolecularFormula


writeTree


parseGraph


parseIt


commentLine


writeSpectra


writeTrace


readTrace


readIon


writeIon


createTempFile


parseTypeLess


drawHistogram


parseArray


parseIntegerMatrix


computeMatrix


predictSpectrum


startPrediction


initializeClass


predictFragmentation


scoreEdge


initializeFieldGroup


addInstanceProvider


resolveParentName


resolveKeyName


splitLongComment


possibleValueComment


newIndependentInstance


invokePossiblyPrivateMethod


parseProperty


convertStringToType


createCollectionInstance


convertToDefaultType


convertToCollection


findSubClassParameterType


wrapPrimitive


newConfiguration


loadConfigurationFromStream


addConfiguration


testCreateInstanceWithDefault


reroot


rerootUpDown


computeConfidence


calculateConfidence


isCompatible


fillList


calculateScales


convertModel


loadFromStream


commonLossCounter


areContentsEqual


toConnectionTables


fromConnectionTables


restrictTo


relabel


testRangeFilter


testConcurrency


addRepository


addPrimaryKeySupplier


addSerialization


findAndValidatePrimaryKeyField


findAndValidatePrimaryKeyFieldByName


validatePrimaryKeyField


singleValue


between


betweenLeftInclusive


betweenRightInclusive


betweenBothInclusive


clause


fetchChild


emptyDocument


clearRepository


disableIndices


enableIndices


callIfOpen


maybeProject


maybeProjectDocument


maybeProjectWithoutConvert


translateSort


doFind


doFindDocument


findAll


countAll


removeOne


addLiteralRecursive


filterRecursion


inject


applyOnIndex


nextMatch


cluster


clusterAndSort


selectRoot


removeElement


isDiagonalMatrix


peakTrimFactor


intensityThresholdPercentile


extendLowerMass


extendHigherMass


selectPeak


toTrace


removePeakAt


computePersistentHomology


makePrecursor


importToProject


enterElement


leaveElement


decompress


writeColumn


findFingerprintColumn


nextRow


reverse


buildSmart


writeAtom


writeBond


oneAgainstAll


extend


absoluteIndex


computeFingerprint


computeGenericFingerprint


countAnyRing


isCarbonOnlyRing


isRingSaturated


countNitrogenInRing


countHeteroInRing


isAromaticRing


countAromaticRing


countHeteroAromaticRing


countSaturatedOrAromaticCarbonOnlyRing


countUnsaturatedCarbonOnlyRing


toRing


prepareSpectrum


annotateSpectrum


adductSwitch


analyzePrecursor


makeRoot


findBestAnnotation


findKBest


searchForCompletePath


chainPrior


putAllIn


generateHypotheticalStructure


makeGeneric


followAcetylOrAlkyl


followAcetyl


followAlkyl


makeFeatureVector


detectableInPositiveMode


buildLibrary


parseF


fromFormula


generateMolecularFormula


addCategory


fromPath


emptySingleton


removeAllWithAdduct


removeAllWithSource


byValue


isValueInstanceOrMessage


isValueInstanceOrThrow


isValueValidOrMessage


isValueValid


isValueValidOrThrow


newTag


byCharge


fetchFingerprintCandidate


findTopStructureMatchByFeatureId


findByFeatureIdAndFormulaId


cascadeDeleteCompound


suffix


toDoc


toFingerIdData


readMask


findProjectProperty


findFingerprintData


insertFingerprintData


testWriteFingerIdData


standardFingerprintData


testWriteStandardFingerprintData


peakListData


cascadeDeleteTest


parseCompound


fromRawCompound


featureFromCompound


moveDown


numberOfVertices


popStack


peekStack


releaseTreeToUser


treeToMotif


searchInLibrary


searchInLibraryTopK


createRandomFingerprintMatrix


createTreeNode


isDefaultScoring


readScoringFromFile


storeScoring


storeDefaultScoring


computeCovariance


conditional


covariance


replaceParent


computeContingencyTable


normalizeOverFirstDim


addPseudoAndRenormalize


allPositive


anyNAN


allZero


findMultiplier


makeDefaultScoringJob


computeScoring


createScoringComputationJob


computeTreeTopologyParallel


computeDefaultTreeTopology


computeTreeTopologyOrThrow


computeTreeTopologyOrThrowParallel


mapPropertyIndex


estimateScoring


makeFingerprintStatistics


estimateScoringDefaultScoring


convertEdgeRepresentation


entropy


entropyParallel


makeStatistics


readScoring


parseTreeFile


parseTreeFromFile


parseTree


buildScoring


destroyCache


queryAgainstLibraryWithPrecursorMass


queryAgainstLibrary


addAdditionalCustom


updateStatistics


flushAllAndUpdateStatistics


addToSpectraBuffer


flushSpectraBuffer


addMolecule


flushMoleculeBuffer


clearAndCreateLinksAndName


determineName


computeNewCandidate


parseATClaim


parseIDClaim


parseClaim


submitAndWatchJob


awaitShutdown


checkWatcherJob


checkSubmitterJob


deleteAllWaiting


changeActiveSubscription


changeHost


checkConnection


checkUnsecuredConnection


submitFingerprintJob


executeBatch


makeConfidenceScorer


useConfidenceScore


executeConfidenceStack


deriveDistinctSetWithThreshold


isSuccessful


executeWithResponse


executeFromStream


executeDataRequest


putJobSubmissionError


buildService


reconnectService


isRefreshTokenValid


needsLogin


needsRefresh


sendPasswordReset


withPath


createDefault


writeRefreshToken


clearRefreshToken


createService


createRefreshTokenRequest


createPasswordResetRequest


asMap


addJobInput


generateSecurityToken


readAndClose


extractOutput


readTrainingData


findSubscriptionById


serverResponseErrorCode


serverResponseErrorMessage


tryAndWaitAsJJob


tryAndWait


sleepNoRegistration


checkThreadInterrupt


awakeAll


enforceGlobalProxySetting


checkExternal


checkLicenseServer


client


consumeClient


doWithClient


applyClient


withConnectionLock


checkTimeAndWait


createClient


testNegativeExampleDifferentMolecularFormula


testIrregularCostMatrix


testNormalAssignment


testNormalAssignmentCost


testEmptySideChainList


testDifferentMolecularFormula


testDifferentSkeletonStructure


testCyclicSideChain


testFormalCharge


readTableFile


haveSameMolecularFormula


removeBond


computeLowerBound


sortByDegree


degreeBasedFilter


sortByWeightedDegree


weightedDegreeBasedFilter


neighborhoodBasedFilter


sortByOrder


deleteEdge


sameMolecularFormula


unbox


computeInitialFeasibleSolution


executePhase


fetchUnmatchedWorker


greedyMatch


initializePhase


removeSideChain


isBridgeNodeOfSideChain


isEquivalent


fromName


toCompoundCandidate


useConnection


parseFingerprint


makeCompleteFlag


retrieveStructureAndAnnotate


findFormula


fetchSpectralData


findAllLazy


findBy


findByNoData


queryAgainstIndividualSpectrum


withLibrary


spectralSimilarity


asObject


doUpdate


serializeCandidate


serializeFingerprint


enrichCandidate


rawTestReferenceSpectra


lookUpStructureAndFingerprintByFormulaTest


testIndexFilter


addCandidate


mergeCompoundName


addSpectra


finishWriting


toExperiment


waitForExit


addToQueue


newLocalVersion


requestFormulaAndCache


nextCompound


removeCustomSource


addCustomSourceIfAbsent


toOptional


addTargetType


addQueryType


asFTree


defaultCache


importSpectra


validateSpectra


mainConnectedComponentTest


orderConnection


changeAnRefresh


withDecorationLock


withDecorationLockIO


decorateChannel


ensureBaseInfrastructure


removeFinishedRun


removeAndFinishRun


runImportPeakData


runFoldChange


makeBackgroundRun


registerJobManager


submitCompoundComputation


aggregate


computeService


instanceBufferFactory


isLoggedIn


selectSubscription


signUp


openPortal


openInBrowser


startJob


startCommand


deleteJob


extractRefSpectra


extractRefSpectraSneaky


closeProject


computeFoldChangeForBlankSubtraction


userId


subscription


copyWithUpdate


ofInvalid


createIsotopePatternAnnotation


newProjectEvent


createDefaultInstance


asCommand


putIfNonNull


asBinaryFingerprint


createTagRangeFilter


makeDefaultQueryParser


updatePointValue


importById


findById


wrapSubmission


createEventSender


addEventSender


sendEvent


addToTable


sortCompound


sortFeature


sortMatch


spectralMatchFilter


convertToProjectCompound


convertToProjectFeature


convertToProjectDefinition


convertFormulaCandidate


findCompoundById


deleteCompoundById


convertToFeatureQuality


findRunById


convertToProjectObjectClass


findTagByName


findTagGroup


addTagGroup


deleteTagGroup


fillFoldChangeTable


deleteFoldChange


summarize


findFormulaCandidateByFeatureIdAndId


findTopStructureCandidateByFeatureId


findStructureCandidateById


convertStructureMatch


createTempProject


validateId


ensureUniqueName


createOrOpen


closeProjectSpace


creatEvent


registerServerJobEventListener


registerServerImportEventListener


extractJobId


loadInstance


extractProgress


createAndSubmitJob


awaitImportAndExtractResult


createAndSubmitPeakListImportJob


createAndSubmitFoldChangeForBlankSubtractionJob


createAndSubmitFoldChangeJob


createAndSubmitCommandJob


indexProject


addTagDefinition


removeTagDefinition


testFragmentationTreeFromFTree


testSpectrumAnnotation


createTestProject


testFoldChange


testMany


testQualityFilter


testDotInFileName


runAssert


runMain


measureTime


configureShutDownHook


configureInvalidator


addIonToPeriodicTable


createToolJob


defaultValue


createFilter


makeJob


addInvalidator


submitSubJob


computeAndAnnotateResult


buildAndSubmitRemote


disableRecalibration


disableIsotopeScore


disableElementDetection


enableSiliconDetection


createImportProgressTracker


newFingerprint


nameOrLocationToLocation


loadFingerprintVersionData


buildProducer


buildWorker


waitForEmpty


showProfile


showLicense


determineAndCheckActiveSubscription


writeSpectralMatch


writeStructureCandidate


formatString


writeRow


writeFeatureQuality


makeTableWriter


writeFormulaCandidate


createHeaderStyle


disableZodiacTwoStepApproach


isSorted


importCompound


importIntoProjectSpace


processRunJob


asCommandSpec


extractFid


toQuantSuffix


columnCount


padTo


installScript


checkInstallationFolder


chooseInstallationPath


detectOS


formatScript


formatLine


formatCompletionFunction


executeBashCommand


visualizeProgress


doImport


expandInput


loadCompoundContainer


loadFormulaResult


updateCompoundID


clearCompoundCache


clearFormulaResultCache


saveStructureSearchResult


deleteStructureSearchResult


saveFingerprintResult


deleteFingerprintResult


deleteSpectraSearchResult


saveZodiacResult


deleteZodiacResult


saveSpectraSearchResult


mayGetAbundance


writeFingerIdDataIfMissing


isDataIncompatible


updateProjectType


asFingerIdResult


importInstanceWithUniqueId


newInstanceFromCompound


findInstance


deleteFingerprintData


checkFingerprintData


defaultSummarizer


writeFingerIdData


extractMolecularFormula


extractMolecularFormulaString


addWriteCompoundSummary


writeProjectSpaceSummary


toHit


chooseBestAndAssignPrimaryClasses


makeHeader


withLock


exportFingerIdResult


links


makeMassIdentifier


makeFormulaName


openDefaultStore


createDefaultStore


disableNoiseIntensityThreshold


testGraphConstructionExample


assertEqualWithoutIndex


assertNormalization


testPreparation


prepareEdgeScorer


createSimpleCompoundSimilarityRepresentation


createIndexMap


assertPeakIsNoise


runOneStepZodiacOnly


createOneCompoundOutput


createIdentificationResultMap


parseReactionString


mergeCluster


addNotExplainableDummyAndTruncateCandidateList


parseIntegerOrThrow


arrayFind


arrayFindIgnoreCase


arrayFindSimilar


cleanString


writeResultSummary


writeZodiacOutput


createSummaryLine


bestInitial


insertionSort


iterationStep


removeActiveEdge


addActiveEdge


updatePeak


computeFromSnapshot


newDummy


combineNewAndOld


assertInput


validateAndThrowError


thinOutGraph


isSymmetricSparse


isBadlyConnected


extractOneCompound


toHashSet


toIndexMap


createGraphBuilder


createGraph


calculateWeight


parseReaction


negate


estimateDistribution


scoreWithoutThreshold


normalization


meanMass


scoreCommons


mapSpec


countCommons


peakIsNoNoise


incrementBitSet


testScoreIsInitiallyZero


testCutBond


testCutRing


testEmptyMolecule


testCreateCombinatorialGraphWithoutFragmentationConstraint


testCreateCombinatorialGraphWithFragmentationConstraint


makeJJob


rerouteAndUpdate


addEdgeAndUpdate


estimateHydrogenRearrangementProbability


calculatePseudoFragmentScore


computeAverageLogScore


calculateMorganIndex


asFragment


calculateRingMembership


scoreFor


scoreLevelFor


peakIntensityScore


scoreFragment


calculateCriticalPathScore


addCriticalPathToTree


addFragment


addCriticalEdgeToTree


relocateAndUpdate


insertNode


addBestNodeAndEdge


colorAllToRoot


scoreBond


chooseRingNumber


readFTree


appendStringToFile


printFragmentationPath


nextFragment


createCombinatorialFragmentationGraph


addReturnNovel


addReturnAlways


deleteNodeDangerously


maximalBitSetLength


writeResultForVisualization


permutateBitSet


permutate


readMolecule


explainBondBy


bondNameGeneric


bondNameSpecific


loadScoringFromFile


writeScoringToFile


toMolecule


determineFormula


cutBond


cutRing


checkForReinsertion


isDirectFragmentOf


extractSubstructureAndMark


nodeString


insertBestMatching


makeValid


toPredictorType


waiting


withConnection


orderConnectionDontIncreaseWaitingCount


pollFreeValidConnection


waitForNewConnectionComesIn


freeConnection


enforceShutdown


addSegment


tryToDivideSegment


divideSegment


addNoiseSegment


extendFirstSegmentToLeft


extendLastSegmentToRight


fromCharge


applyNoiseFiltering


totalTic


samePeak


spectrumFor


ensureLargeToSmall


addAdductPeak


comparePeakWidthSmallToLarge


correlation


weightedAverage


sumIntensity


filterByIonIdentity


learnIsolationWindow


detectRightBoundary


detectLeftBoundary


mayBeHLoss


splitRight


splitLeft


backOnDisc


dropBuffer


readFromMemory


performCheck


scoreIso


collectFromSummary


robustVariance


variance


robustAverage


median


findTarget


assignFeature


doIAmAnIsotope


isIsotopePattern


alreadyFound


correlate


correlateBiggerToSmaller


maximumLikelihoodIsotopeScore


findApex


prepareForCosine


intensityAfterPrecursor


mergeViaClustering


addSample


makeFeature


toIsotopeSpectrum


fitPeakShape


alignAndGapFilling


collectFeatureStatistics


collectAlignmentStatistics


trimToRegion


isMinimum


findSecondApex


globalMaximum


normalizeAndShiftSignal


findAverageRetentionTime


correlationScoring


extendRangeForBackground


applyExtended


computeFirstOrderDerivative


computeSecondOrderDerivative


detectExact


detectFirst


detectWithFallback


detectSingleScanPoint


buildTraceOrReturnEmpty


buildTrace


tryToExtend


learnFromSample


collectStatistics


ensureInsertion


pickCorrelated


findDuplicate


calculateEdgeScore


calculateInterSampleCorrelation


interSampleCorrelation


probability


predictProbability


sample


probabilityUpdate


spread


compatibilityScore


estimateError


estimatePeakShapeError


computeAlignment


rejoin


tryAlign


gapFilling


gapFill


splitSegment


divide


gapFillingInParallel


makeFeatureTable


estimateErrorTerm


recalibrateRetentionTimes


makeRealignJob


realign


alignMatchingListBipartite


alignMatchingListDynamicTimeWarping


backtrack


backtrackFrom


computePairwiseCosine


addIfPositive


without


formatDescription


calculateNoiseLevel


noDecompositionFor


checkPeakWidth


checkLength


checkStartAndEndPoint


parseRun


previousIon


nextIon


createGradient


addPeakAnnotation


mapTreeToInput


replacePrecursorPeakByIsotopePeak


renormalizeSpectrum


isotopePatternDetection


elementDetection


adductDetection


adjustValenceFilter


warnIfFormulaCandidateWithoutMatchingAdduct


checkIonization


correctCollisionEnergy


removeEmptySpectra


checkIonMass


nameOf


ensureIonType


searchForIon


extractSpectrum


mergeIfMoreThanOneSpectrum


mergeParentPeak


mergePeak


predictSugarFormula


readRegressionNetwork


readNetwork


isPredictable


disjoin


predictLatentVector


normalizeAndCenter


maybeDecomposable


decompose


nextIntegerInRange


decomposeSingleIntegerMass


afterFindingADecomposition


integerDecompose


integerBound


decomposeRangeIntegerMass


integerDecomposeSingleElement


findDecomposer


addNewDecomposer


fetchNextFormula


applyIonType


decomposerTest


singleElementTest


idForRetentionTime


processSample


makeMergeStatistics


collectFinalStatistics


updateRetentionTimeAxis


extractMoIsForAlignment


addToReport


scoreCategory


extractIsotopePattern


featureFinding


isDisjoint


simpleTraceAssignment


simpleTraceAssignmentByArea


traceAlignment


upgrade


temporaryStorage


createNewStorage


deleteTrace


addRect


removeRect


updateRect


dispatchKeyEvent


updateCanvas


computePersistentHomologyHierarchical


detectMaxima


createSegmentFor


groupByCeAndMerge


findPrecursorPeak


writeBinary


loadBinary


expandPattern


revert


extractPattern


correlationScore


correlateSmallerToBigger


addNextPeak


extendLeft


extendLeftUntil


extendRight


extendRightUntil


findSeed


detectTrace


detectMostIntensivePeakWithin


pickTrace


estimateConfidence


addTraceToCache


estimateConfidenceFromIsotope


isParamValueNull


parseScanNumber


estimatePeakWidth


computeNormalization


noisySpectrum


tracePicked


unalignedMoI


createRect


emptyRect


noFeatureFound


simplifyEdgeName


shortForm


extractCompound


singletonCompound


typeFor


toPrecursorIonType


computeScore


computeScoreFromCorrelation


resolveCompatibilityNetwork


compareBeamSearch


beamSearch


transformGraphIntoCompatibilityGraph


withAdded


interpolateIntensity


collectIsotopic


mergeAllMoIsForSampleWithinRect


mergeMoIs


addMoI


removeMoIsIf


makeAlignmentBackbone


oneSidedOutlierRemoval


cleanupOldMoIs


retentionTimeError


recalibrateByAlignment


strictMonotonic


importRun


importTrace


mergeTraceRef


reassignCharge


importRetentionTimeAxis


testDetectMaxima


isBitSet


foldFormula


loadFromProfile


writeToProfile


defaultAnalyzer


computeAndScoreIsotopePattern


simulatePattern


binomialCoefficient


addByNewton


simulateFragmentPatternWithImperfectFilter


shouldStop


addZeroVector


testStrangePatternGeneration


afterGraphBuilding


buildIdColorMap


computeAndScorePattern


findPatternInMostIntensiveScan


findPattern


beforePeakScoring


testProgram


makeMixedTestSpectrumSameCompound


makeTestSpectrumSameCompound


testCompareWithSpectralAlignment


testCompareReverseCosineWithSpectralAlignment


createSearchPreparedSpectrum


testFastCosineIdenticalSpectra


testFastCosineNonMatchingSpectra


testFastCosinePartiallyMatchingSpectra


testFastReverseCosineSameSpectra


testFastReverseCosineMirrorSpectra


testWithEmptySpectra


testGetScorer


testEmptySpectra


testNoMatch


testMatchParallel


testMatchAllParallel


testIntensity


testSelfSimilarity


prepareQuery


fastCosine


fastReverseCosine


matchParallel


matchAllParallel


scoreAllAgainstAll


createQueryWithIntensityTransformationNoLoss


scoreWithResult


simpleAssignment


peakMatching


reversePeakMatching


optimalAssignment


allHumanTest


hGutBTransformer


allHumanTransformer


toBType


addSequenceStep


isConjugate


applyReactionChain


metabolizeWithEnzyme


processPolymer


onSubscribe


onNext


updateAndCheckIfDone


awaitAndDeleteJob


awaitJob


enableEventListening


unwrapErrorResponse


unwrapErrorMessage


restShutdown


restHealthCheck


startAndConnectLocally


isKnownObjectDataType


toDataObjectEvent


externalFeatureId


ionMass


dataQuality


sampleId


sampleName


normalizationFactor


noiseLevel


absolute


weight


addContentItem


subscriberId


subscriberName


expirationDate


startDate


instanceLimit


instanceHashRecordingTime


molecularFormula


adduct


exactMass


structureAnnotationName


structureAnnotationScore


password


projectId


levelIndex


parentId


parentName


parentFragmentId


lossFormula


collisionEnergy


instrument


scanNumber


cosineQuery


isCosineQuery


precursorPeak


sumNormFactor


firstPeakNormFactor


addScanNumberItem


minSimilarity


classyFireClasses


addClassyFireClassesItem


filterByIsotopePattern


isFilterByIsotopePattern


performBottomUpSearch


isPerformBottomUpSearch


useHeuristic


peakAnnotation


groupName


groupType


overallQuality


categoryName


bestMatch


spectralMatchCount


referenceSpectraCount


displayName


compoundId


eventType


featuredId


formulaId


annotation


representativeCorrelation


intensityRatioScore


recompute


isRecompute


burnInPeriod


hypotheticalStructure


isotopePattern


structureName


fingerprint


neutralMass


thresholdFilter


compoundClasses


selectionCriterion


confidenceExactMatch


statisticsType


aggregationType


quantificationMeasure


rowType


queryPeak


referencePeak


fragmentId


massDeviationDa


number


metabolicTransformation


runId


chromatography


ionization


fragmentation


importJobId


isotopeScore


treeScore


zodiacScore


medianMassDeviation


fragmentationTree


isotopePatternAnnotation


errorType


isError


isWarning


expansiveSearchConfidenceMode


tagName


tagType


valueType


useScoreThreshold


isUseScoreThreshold


searchable


isSearchable


numberOfReferenceSpectra


addCommandItem


noiseIntensity


jobEffect


indeterminate


isIndeterminate


currentProgress


parentPeak


substructureScore


adductNetwork


specMatchId


similarity


querySpectrumIndex


splash


referenceSpectrumType


referenceSpectrum


querySpectrumType


librarySearch


isLibrarySearch


formulaSearch


isFormulaSearch


zodiac


isZodiac


isFingerprint


structureSearch


isStructureSearch


jobSubmission


spectrumAnnotation


formulaAnnotation


structureAnnotation


compoundClassAnnotation


expansiveSearchState


enableAnalogueSearch


isEnableAnalogueSearch


minSimilarityAnalogue


scoring


updateAvailable


isUpdateAvailable


fingerIdModelVersion


fingerprintId


userID


activeSubscriptionId


classyFireLineage


addClassyFireLineageItem


leftGroup


rightGroup


aggregation


quantification


quantType


objectId


foldChange


numberOfCandidateToPredict


createDefaultDateFormat


createDefaultObjectMapper


buildWebClientBuilder


addDefaultHeader


parameterToString


selectHeaderAccept


selectHeaderContentType


selectBody


prepareRequest


collectionPathParameterToString


healthRequestCreation


shutdownRequestCreation


closeProjectRequestCreation


copyProjectRequestCreation


createProjectRequestCreation


openProjectRequestCreation


deleteJobRequestCreation


startCommandRequestCreation


startJobRequestCreation


isLoggedInRequestCreation


loginRequestCreation


openPortalRequestCreation


selectSubscriptionRequestCreation


signUpRequestCreation


deleteCompoundRequestCreation


removeTagFromCompoundExperimentalRequestCreation


addGroupRequestCreation


deleteGroupRequestCreation


deleteTagRequestCreation


computeFoldChangeForBlankSubtractionRequestCreation


removeTagFromRunExperimentalRequestCreation


testDeleteJob


testGetJob


testStartJob


deleteTestProject


deleteDirectory


copyToTempDirectory


copyDirectory


removeTagFromRunExperimentalTest


closeProjectTest


createProjectTest


openProjectTest


compactProjectTest


isLoggedInTest


loginTest


selectSubscriptionTest


testGetFormulaCandidate


adductProvider


adductSetProvider


healthTest


deleteCompoundTest


testPlanExecutionFinished


addGroupTest


deleteGroupTest


deleteTagTest


fitByCorrelation


estimate


reserve


addToOne


addToZero


addToOneIndexCheck


addToZeroIndexCheck


copyTo


checkProbability


rootUnit


innerVertexUnit


leafUnit


checkSolver


pastBuildSolution


configureProgress


recalculateScore


estimateTreeSizeAndRecalibration


revertTreeSizeIncrease


checkForTreeQuality


prepareGraphBuilding


performDecomposition


performPeakScoring


buildGraphWithoutReduction


ensureTopologicalOrder


performGraphReduction


performGraphScoring


addSyntheticParent


postProcessTree


makeTreeReleaseReady


addPeakAnnotationToTree


parseBuilderPriority


prepareSolver


buildSolution


isComputationCorrect


isForbidden


putIfGreater


doPut


initializeEmptyGraph


addRoot


forceParentPeakInRecalibration


addKnownStrangeLoss


convertMap


fastReplace


printToFile


invalidateColor


recomputeCriticalScore


calculateRelocation


findBestLoss


filterOut


solutionWithSingleRoot


mapVertices


backtrackBestPath


relocateAll


relocate


computeTree


afterGraphScoring


makeTreeStatistics


transformDecompositionList


testData


isSet


addOption


addSet


addResult


allAgainstAll


parameterOptimization


runningTimeDetermination


performAlignment


computeAlignmentSimilarity


traceBack


normalizeScore


readStatisticalParameter


performSelfAlignment


addAlignmentSet


showAlignmentSet


displayAlignment


layoutGraph


subtractionFromSelf


mainOld


performSimpleAlignment


readFileToString


writeToDot


visualize


createGraphics


addFragmentationTree


printStatistics


computeStatistics


generateRandomTree


calculateStatistics


parseMolecularFormula


addFunctionalGroupSubstitutionToHash


checkMainPartOfNeutralLoss


addAtom


symmetricDifference


parseEdge


readFromList


parseNode


determineRoot


postOrderNodeList


postOrder


toAlignmentTree


buildAlignmentTree


calculateDeviationManipulator


buildDecoyTree


readFromDot


testSelfPath


testUnitCount


alignUnit


testAllocation


testSize


testInsertion


testDoubleKeyInsertion


testPutIfGreater


testDefaultValue


testHashMapAllocation


checkCompatibility


subList


deleteLeft


innerJoinLeft


innerJoinRight


matchVertices


assignAll


decorateTree


addParentNode


addJoin


addInnerJoinLeft


addInnerJoinRight


trimSizeForHashMap


pushMatch


pushDeleteLeft


pushDeleteRight


pushJoin


addTraceItemFor


traceMatch


traceDeleteLeft


traceDeleteRight


joinLeft


joinRight


pushJoinLeft


pushJoinRight


traceJoinLeft


traceJoinRight


collisionInspection


findNext


checkRange


computeE


computeS


recurrence


calculateCorrelation


isPassing


toRank


orderAll


showLoadWindow


showPlotWindow


showAlignmentWindow


resolveFileList


generateToolTip


buildSubset


cache


readInput


updateScoring


createFileArray


makeDropTarget


quote


selfJoin


scoreVertices


selfAlignScore


endOfRow


scoreGeneralJoin


generalScore


isRealAncestor


testCounting


genNext


OuterTraversal


InnerTraversal


printNode


printEdge


colorScheme


printDeletion


prettyFormula


endTable


writeGraphicalOutput


makeEdge


nextColor


expectation


pushTracer


computeAllParallel


computeAll


forceCompute


extractName


fromReader


keySetOfDictionary


isInteger


overlay


overlayIntersection


extractAdditionalTables


extractTemplateTables


fillTable


buildMaskFor


allowAll


identical


invert


enforceCompatibility


isSameSet


convertToBinary


convertToShorts


asDeterministic


fastProb


toOneZeroString


asProbabilistic


toProbabilityArray


updateLevel


fromOneZeroString


dotProduct


updateProbabilistic


updateQuality


mergeAll


fromStringOrNull


asQuantificationTable


fromMeasurementAndReference


leastCommonAncestor


entrySet


extendWithPlainIonization


anyEmpty


mergeSpectra


mapRightToLeft


mapLeftToRight


orderByScoreDescending


treeAdapterStatic


deleteVertex


addLoss


normalizeStructure


isResolvable


treeToNeutralTree


treeToIonTree


reduceTree


updateTreeStatistics


recalculateTreeWeight


reorderVertices


verticesPerColor


isConnectedGraph


isTopologicalOrdered


addRootVertex


goToFirstLeaf


deleteOutEdgeInternal


deleteInEdgeInternal


inPostOrder


removeFragmentAnnotation


removeLossAnnotation


addFragmentAnnotation


addLossAnnotation


deleteLoss


deleteOutEdgeInternalKeepTopologicalOrder


deleteFragment


checkConsistency


findBestAdduct


withEnforced


addAndMerge


retrieveFrom


neutralMassSpectrum


addOffset


cutByMassThreshold


extractIsotopePatternFromMultipleSpectra


extendPattern


guessIonization


calculateTIC


extractPeakList


copyPeakList


computeNormalizationScale


normalizeByPeak


computeSumScale


normalizeByScale


indexOfPeak


linearSearch


mostIntensivePeakWithin


mostIntensivePeakWithinLinearSearch


mostIntensivePeakWithinBinarySearch


indexOfFirstPeakWithin


isMassOrderedSpectrum


sortSpectrumByMass


sortSpectrumByDescendingMass


sortSpectrumByIntensity


sortSpectrumByDescendingIntensity


selectSpectrumWithMostIntensePrecursor


addPeak


orderedSpectrum


quantificationTableFromTraceSet


forEach


runInBackgroundIO


learnFromData


nextLong


nextRandom


applyToTrainMatrix


applyToKernelMatrix


applyToKernelRow


logGamma


logBeta


round


nearest


binomial


medianInPlace


spearman


geometricAverage


robustGeometricAverage


vectorMean


vectorVariance


unflatVector


flatMatrix


transpose


selectGrid


normalizeTest


applySum


applyWeightedSum


applyScale


selectDiagonal


parallelizeSymmetricMatrixComputation


flatTensor


fromElementMap


singleElement


parseOrThrow


parseOrNull


parseAndExecute


elementArray


atomCount


heteroWithoutOxygenToCarbonRatio


copyToBuffer


isCarbonHydrogenPlusSubset


isAllNonPositive


isAllPositiveOrZero


formatByHill


withoutHydrogen


toFormula


parseIonType


emptyFormula


addCommonIonType


addCommonIonMode


refreshRegularExpression


ionByMass


ionByNameOrThrow


ionByNameOrNull


ionByNameFromTableOrNull


parseUnstackedFormula


extendByElement


searchMass


fetchFirst


alphabetFor


decompositionToFormula


substituteName


formatToString


isOrdered


fromStringValue


extractChargeLayer


nextFormula


extractFormulaLayer


parseCharge


searchForSelection


extendCache


calculateValence


newPackerFor


newPacker


serializeToString


tryEncode


addIsotope


startTask


endTask


formatDuration


epochLongToZonedDateTime


withTime


withTimeR


withTimeRIo


isZipArchive


copyFolder


moveFolder


mapTable


eachRow


readTable


resource


readAsFloatMatrix


readAsFloatVector


readAsDoubleMatrix


readAsDoubleVector


writeDoubleMatrix


writeDoubleVector


writeFloatMatrix


writeFloatVector


listAndClose


findAndClose


walkAndClose


sneakyWalk


estimateCharOccurrence


sizeToReadableString


forDouble


findCentroid


distanceBetween


clusterJob


randomStart


unwrap


delegateFor


randomLong


searchForLong


searchForDoubleByIndex


searchForDouble


nextSetBit


startReading


validateScoreValue


annotate


computeAnnotationIfAbsent


removeAnnotation


fireAnnotationChange


sizeToReadableStringTest


parseTable


testOverlay


testJumpTo


jumpUnion


jumpIntersection


jumpPairwise


jumpMask


jumpExist


jumpNotSet


filterByFormulaSet


testDelegation


testMedian


testSort


testSearch


testFormulaSet


testDeterministicFingerprint


testProbabilisticFingerprint


testBlueObelisk


testTableStack


testTableNewStack


testThreadLocalStack


testFormulaCreation


testHillNotation


testGrouping


testIonParser


updateBucket


withWriter


deleteBucket


checkStreamCompression


decompressRawStream


toCompressedStream


withCompression


openDefault


createDefaultFileStore


readLockPath


withWriteLockR


writeLockPath


removeLockIfFree


makePath


readInBackground


awaitReadInBackground


createAndRead


/**
 * QAP SpecViewer Command Pump
 */


/**
 * Main component for SpecViewer.
 *
 * @param {object} parentElement - element that will hold SpecViewer.
 * @param {string} id - name of the ID of the SpecViewer div container.
 * @param {int} queryFreq - refresh delay in seconds
 * @param {bool} is_stack - Is this viewer for stacked data or non-stacked
 */