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- ---
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  license: apache-2.0
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  task_categories:
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  - graph-ml
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  [![Paper](https://img.shields.io/badge/Paper-Bioinformatics-green.svg)](https://doi.org/10.1093/bioinformatics/btaf408)
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  [![arXiv](https://img.shields.io/badge/arXiv-2507.14468-b31b1b.svg)](https://arxiv.org/abs/2507.14468)
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- ## ? Dataset Description
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  This dataset contains the benchmark data used in the paper **"BioGraphFusion: Graph Knowledge Embedding for Biological Completion and Reasoning"** published in *Bioinformatics*.
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- ## ?? Dataset Structure
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  The dataset includes three biomedical knowledge graph completion tasks with background knowledge integration:
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@@ -54,7 +54,7 @@ The dataset includes three biomedical knowledge graph completion tasks with back
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  - **Main Dataset**: UMLS (2,523 triples) with multi-domain entities
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  - **Description**: Reasons about medical concepts and their hierarchical relationships
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- ## ? Dataset Statistics
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  | Dataset | Task | Background Knowledge Sources | Main Dataset Targets | Total Triples |
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  |---------|------|------------------------------|---------------------|---------------|
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  | **Protein-Chemical Interaction** | Protein-chemical interaction prediction | Drug-Disease Relationships SIDER (14,631) + Disease-Gene Relationships DisGeNet (130,820) | STITCH (23,074) Chemical | ~168K |
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  | **Medical Ontology Reasoning** | Medical concept reasoning | Various Medical Relationships UMLS (4,006) | UMLS (2,523) Multi-domain Entities | ~6.5K |
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- ## ? Usage
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  ### Loading the Dataset
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  umls_data = load_dataset("Y-TARL/BioGraphFusion", "umls")
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  ```
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- ## ? Citation
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  If you use this dataset in your research, please cite our paper:
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@@ -93,17 +93,17 @@ If you use this dataset in your research, please cite our paper:
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  }
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  ```
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- ## ? Related Resources
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  - **Paper**: [Bioinformatics](https://doi.org/10.1093/bioinformatics/btaf408)
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  - **Preprint**: [arXiv:2507.14468](https://arxiv.org/abs/2507.14468)
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  - **Code**: [GitHub Repository](https://github.com/Y-TARL/BioGraphFusion)
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- ## ? License
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  This dataset is released under the Apache 2.0 License.
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- ## ? Acknowledgements
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  We thank the original data providers:
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  - STITCH for protein-chemical interactions
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  - UMLS for medical ontology data
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- ## ? Contact
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  For questions about the dataset, please open an issue in the [GitHub repository](https://github.com/Y-TARL/BioGraphFusion/issues).
 
 
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+ ๏ปฟ---
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  license: apache-2.0
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  task_categories:
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  - graph-ml
 
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  [![Paper](https://img.shields.io/badge/Paper-Bioinformatics-green.svg)](https://doi.org/10.1093/bioinformatics/btaf408)
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  [![arXiv](https://img.shields.io/badge/arXiv-2507.14468-b31b1b.svg)](https://arxiv.org/abs/2507.14468)
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+ ## ๐Ÿ“Š Dataset Description
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  This dataset contains the benchmark data used in the paper **"BioGraphFusion: Graph Knowledge Embedding for Biological Completion and Reasoning"** published in *Bioinformatics*.
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+ ## ๐Ÿ—๏ธ Dataset Structure
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  The dataset includes three biomedical knowledge graph completion tasks with background knowledge integration:
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  - **Main Dataset**: UMLS (2,523 triples) with multi-domain entities
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  - **Description**: Reasons about medical concepts and their hierarchical relationships
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+ ## ๐Ÿ“ˆ Dataset Statistics
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  | Dataset | Task | Background Knowledge Sources | Main Dataset Targets | Total Triples |
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  |---------|------|------------------------------|---------------------|---------------|
 
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  | **Protein-Chemical Interaction** | Protein-chemical interaction prediction | Drug-Disease Relationships SIDER (14,631) + Disease-Gene Relationships DisGeNet (130,820) | STITCH (23,074) Chemical | ~168K |
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  | **Medical Ontology Reasoning** | Medical concept reasoning | Various Medical Relationships UMLS (4,006) | UMLS (2,523) Multi-domain Entities | ~6.5K |
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+ ## ๐Ÿ’ป Usage
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  ### Loading the Dataset
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  umls_data = load_dataset("Y-TARL/BioGraphFusion", "umls")
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  ```
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+ ## ๐Ÿ“ Citation
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  If you use this dataset in your research, please cite our paper:
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  }
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  ```
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+ ## ๐Ÿ”— Related Resources
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  - **Paper**: [Bioinformatics](https://doi.org/10.1093/bioinformatics/btaf408)
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  - **Preprint**: [arXiv:2507.14468](https://arxiv.org/abs/2507.14468)
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  - **Code**: [GitHub Repository](https://github.com/Y-TARL/BioGraphFusion)
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+ ## ๐Ÿ“„ License
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  This dataset is released under the Apache 2.0 License.
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+ ## ๐Ÿ™ Acknowledgements
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  We thank the original data providers:
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  - STITCH for protein-chemical interactions
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  - UMLS for medical ontology data
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+ ## ๐Ÿ“ž Contact
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  For questions about the dataset, please open an issue in the [GitHub repository](https://github.com/Y-TARL/BioGraphFusion/issues).
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+