Upload 4 files

best_paper/fill_missing_abstracts.py

@@ -0,0 +1,195 @@
+"""
+Fill missing abstracts in use_this_matches.json by querying OpenAlex (primary) and Crossref (fallback).
+
+Usage:
+  python best_paper/fill_missing_abstracts.py \
+      --input best_paper/use_this_matches.json \
+      --output best_paper/use_this_matches_filled.json \
+      --limit 0 \
+      --sleep 0.5
+
+Notes:
+- Requires network access.
+- We only overwrite `scraped_abstract` for entries with no abstract/abstract_raw/scraped_abstract.
+"""
+
+import argparse
+import html
+import json
+import re
+import time
+from pathlib import Path
+from typing import Dict, List, Optional
+from urllib.parse import quote_plus
+
+import requests
+
+
+def normalize_title(text: str) -> str:
+    text = text.lower()
+    text = re.sub(r"[^a-z0-9]+", " ", text)
+    return " ".join(text.split())
+
+
+def decode_openalex_inverted_index(idx: Dict[str, List[int]]) -> str:
+    # Reconstruct abstract from OpenAlex inverted index.
+    positions: Dict[int, str] = {}
+    for word, locs in idx.items():
+        for pos in locs:
+            positions[pos] = word
+    return " ".join(positions[i] for i in sorted(positions))
+
+
+def fetch_openalex(title: str, email: Optional[str] = None) -> Optional[str]:
+    url = "https://api.openalex.org/works"
+    params = {"search": title, "per-page": 3}
+    if email:
+        params["mailto"] = email
+    resp = requests.get(url, params=params, timeout=15)
+    resp.raise_for_status()
+    data = resp.json()
+    for item in data.get("results", []):
+        candidate_title = item.get("title") or ""
+        if not candidate_title:
+            continue
+        if normalize_title(candidate_title) != normalize_title(title):
+            continue
+        idx = item.get("abstract_inverted_index")
+        if idx:
+            return decode_openalex_inverted_index(idx)
+        abstract = item.get("abstract")
+        if abstract:
+            return abstract
+    return None
+
+
+def fetch_semantic_scholar(title: str) -> Optional[str]:
+    # Semantic Scholar Graph API search by title.
+    url = "https://api.semanticscholar.org/graph/v1/paper/search"
+    params = {
+        "query": title,
+        "limit": 5,
+        "fields": "title,abstract",
+    }
+    resp = requests.get(url, params=params, timeout=15, headers={"User-Agent": "abstract-filler"})
+    resp.raise_for_status()
+    data = resp.json()
+    for item in data.get("data", []):
+        candidate_title = item.get("title") or ""
+        if not candidate_title:
+            continue
+        if normalize_title(candidate_title) != normalize_title(title):
+            continue
+        abstract = item.get("abstract")
+        if abstract:
+            return abstract
+    return None
+
+
+def strip_html(text: str) -> str:
+    text = re.sub(r"<[^>]+>", " ", text)
+    text = html.unescape(text)
+    return " ".join(text.split())
+
+
+def fetch_crossref(title: str) -> Optional[str]:
+    url = "https://api.crossref.org/works"
+    params = {
+        "query.bibliographic": title,
+        "rows": 3,
+        "select": "title,abstract",
+        "sort": "score",
+        "order": "desc",
+    }
+    resp = requests.get(url, params=params, timeout=15, headers={"User-Agent": "abstract-filler"})
+    resp.raise_for_status()
+    data = resp.json()
+    for item in data.get("message", {}).get("items", []):
+        titles = item.get("title") or []
+        if not titles:
+            continue
+        candidate_title = titles[0]
+        if normalize_title(candidate_title) != normalize_title(title):
+            continue
+        abstract = item.get("abstract")
+        if abstract:
+            return strip_html(abstract)
+    return None
+
+
+def has_abstract(entry: Dict) -> bool:
+    abs_val = entry.get("abstract_raw") or entry.get("abstract") or entry.get("scraped_abstract")
+    return bool(abs_val and str(abs_val).strip())
+
+
+def try_fill(entry: Dict, email: Optional[str]) -> Optional[str]:
+    title = entry.get("title") or entry.get("title_raw") or ""
+    if not title:
+        return None
+    # Try OpenAlex first, then Crossref, then Semantic Scholar.
+    try:
+        abstract = fetch_openalex(title, email=email)
+        if abstract:
+            return abstract
+    except Exception:
+        pass
+    try:
+        abstract = fetch_crossref(title)
+        if abstract:
+            return abstract
+    except Exception:
+        pass
+    try:
+        abstract = fetch_semantic_scholar(title)
+        if abstract:
+            return abstract
+    except Exception:
+        pass
+    return None
+
+
+def main() -> None:
+    parser = argparse.ArgumentParser(description="Fill missing abstracts by querying OpenAlex/Crossref.")
+    parser.add_argument(
+        "--input",
+        default="use_this_matches_filled.json",
+        help="Input JSON path (defaults to the already-filled file).",
+    )
+    parser.add_argument(
+        "--output",
+        default="use_this_matches_filled.json",
+        help="Output JSON path (in-place update of the filled file).",
+    )
+    parser.add_argument("--limit", type=int, default=0, help="Max fills to attempt (0 = no limit).")
+    parser.add_argument("--sleep", type=float, default=0.5, help="Seconds to sleep between network calls.")
+    parser.add_argument("--mailto", type=str, default=None, help="Optional email for OpenAlex polite use.")
+    args = parser.parse_args()
+
+    data = json.load(open(args.input))
+    missing_idx = [i for i, item in enumerate(data) if not has_abstract(item)]
+    print(f"Total entries: {len(data)} | Missing abstracts: {len(missing_idx)}")
+
+    filled = 0
+    for count, idx in enumerate(missing_idx, start=1):
+        if args.limit and filled >= args.limit:
+            break
+        entry = data[idx]
+        title = entry.get("title") or entry.get("title_raw") or f"(paper {entry.get('paper')})"
+        print(f"[{count}/{len(missing_idx)}] Fetching abstract for: {title}")
+        abstract = try_fill(entry, email=args.mailto)
+        if abstract:
+            data[idx]["scraped_abstract"] = abstract
+            filled += 1
+            print(f"  -> filled (len={len(abstract)})")
+        else:
+            print("  -> not found")
+        time.sleep(args.sleep)
+
+    Path(args.output).parent.mkdir(parents=True, exist_ok=True)
+    with open(args.output, "w") as f:
+        json.dump(data, f, indent=2)
+    print(f"Done. Filled {filled} abstracts. Saved to {args.output}")
+
+
+if __name__ == "__main__":
+    main()

best_paper/negative_papers.json

@@ -1,3 +1,3 @@
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-oid sha256:7bebabe9cdcdb555910b933af4065b969cd82dbcefdf9e3c70c0da4ec65def83
-size 23085917
+oid sha256:2b028e88ef96c6bcaa5ea8c7ef6f0075e2e712b6c49b03eed15f5d991e38546c
+size 24047835

best_paper/negative_summary.csv

@@ -1,15 +1,15 @@
 paper_id,title,citation_best,negative_count,negative_min,negative_max
 3122089757,scaling attributed network embedding to massive graphs,36,10,36,36
-2996908057,winogrande an adversarial winograd schema challenge at scale,396,10,390,402
+2996908057,winogrande an adversarial winograd schema challenge at scale,396,10,391,402
 3035507081,beyond accuracy behavioral testing of nlp models with checklist,8,10,8,8
 3009121097,a design engineering approach for quantitatively exploring context aware sentence retrieval for nonspeaking individuals with motor disabilities,27,10,27,27
-3030254708,articulating experience reflections from experts applying micro phenomenology to design research in hci,0,10,1,905
+3030254708,articulating experience reflections from experts applying micro phenomenology to design research in hci,0,10,0,109
 3017640030,beyond the prototype understanding the challenge of scaling hardware device production,22,10,22,22
 3032514484,bug or feature covert impairments to human computer interaction,6,10,6,6
 3014972121,co designing checklists to understand organizational challenges and opportunities around fairness in ai,301,10,292,309
 3013330822,color and animation preferences for a light band ehmi in interactions between automated vehicles and pedestrians,113,10,112,114
 3029211878,connecting distributed families camera work for three party mobile video calls,33,10,33,33
-3030161855,creating augmented and virtual reality applications current practices challenges and opportunities,185,10,182,187
+3030161855,creating augmented and virtual reality applications current practices challenges and opportunities,185,10,182,188
 3030528496,design study lite methodology expediting design studies and enabling the synergy of visualization pedagogy and social good,26,10,26,26
 3029149150,designing ambient narrative based interfaces to reflect and motivate physical activity,48,10,48,48
 3030460604,exploring how game genre in student designed games influences computational thinking development,25,10,25,25
@@ -34,19 +34,19 @@ paper_id,title,citation_best,negative_count,negative_min,negative_max
 3034925446,tuning free plug and play proximal algorithm for inverse imaging problems,2,10,2,2
 3002398329,white box fairness testing through adversarial sampling,104,10,103,105
 3005780259,an empirical study on program failures of deep learning jobs,77,10,77,78
-3090625562,towards the use of the readily available tests from the release pipeline as performance tests are we there yet,0,10,0,20
+3090625562,towards the use of the readily available tests from the release pipeline as performance tests are we there yet,0,10,0,304
 3091518781,time travel testing of android apps,83,10,83,83
-3045552507,here we go again why is it difficult for developers to learn another programming language,0,10,2,178
+3045552507,here we go again why is it difficult for developers to learn another programming language,0,10,0,78
 3105398568,big code big vocabulary open vocabulary models for source code,87,10,86,88
 3103843169,unblind your apps predicting natural language labels for mobile gui components by deep learning,47,10,47,47
 3100403944,translating video recordings of mobile app usages into replayable scenarios,53,10,53,53
 3034497099,synthesizing aspect driven recommendation explanations from reviews,12,10,12,12
 3081170586,on sampled metrics for item recommendation,330,10,328,332
-3021455140,hummingbird energy efficient gps receiver for small satellites,0,10,0,1268
-3023792721,m cube a millimeter wave massive mimo software radio,0,10,0,524
+3021455140,hummingbird energy efficient gps receiver for small satellites,0,10,0,1080
+3023792721,m cube a millimeter wave massive mimo software radio,0,10,0,502
 3098350529,no regret learning dynamics for extensive form correlated equilibrium,11,10,11,11
-3098903812,language models are few shot learners,12370,10,4655,20318
-3013640143,understanding detecting and localizing partial failures in large system software,17,10,16,17
+3098903812,language models are few shot learners,12370,10,4246,20318
+3013640143,understanding detecting and localizing partial failures in large system software,17,10,16,18
 3108362055,hxdp efficient software packet processing on fpga nics,12,10,11,13
 3093054587,byzantine ordered consensus without byzantine oligarchy,14,10,13,15
 3095716351,virtual consensus in delos,7,10,6,8
@@ -61,23 +61,23 @@ paper_id,title,citation_best,negative_count,negative_min,negative_max
 3105035347,controlling fairness and bias in dynamic learning to rank,60,10,59,61
 2995994861,rateless codes for near perfect load balancing in distributed matrix vector multiplication,15,10,15,15
 3030167386,shapesearch a flexible and efficient system for shape based exploration of trendlines,1,10,1,1
-3028661980,pump up the volume processing large data on gpus with fast interconnects,0,10,0,273
+3028661980,pump up the volume processing large data on gpus with fast interconnects,0,10,2,118
 3093717762,handmorph a passive exoskeleton that miniaturizes grasp,29,10,28,30
 3008139924,opportunities for optimism in contended main memory multicore transactions,33,10,33,33
 3023027202,open intent extraction from natural language interactions,30,10,30,30
 2963763772,how to combine tree search methods in reinforcement learning,13,10,13,13
 2964345285,bridging the gap between training and inference for neural machine translation,20,10,20,20
-2940636472,anchored audio sampling a seamless method for exploring children s thoughts during deployment studies,0,10,1,161
+2940636472,anchored audio sampling a seamless method for exploring children s thoughts during deployment studies,0,10,0,48
 2935781565,unremarkable ai fitting intelligent decision support into critical clinical decision making processes,72,10,72,73
 2927052147,increasing the transparency of research papers with explorable multiverse analyses,112,10,111,113
-2941798514,project sidewalk a web based crowdsourcing tool for collecting sidewalk accessibility data at scale,0,10,0,154
+2941798514,project sidewalk a web based crowdsourcing tool for collecting sidewalk accessibility data at scale,0,10,3,229
 2940996955,touchstone2 an interactive environment for exploring trade offs in hci experiment design,5,10,5,5
 2941255702,a translational science model for hci,57,10,57,57
-2942399136,street level algorithms a theory at the gaps between policy and decisions,0,10,1,303
-2942185243,retype quick text editing with keyboard and gaze,0,10,0,699
-2941419932,picme interactive visual guidance for taking requested photo composition,0,10,1,105
+2942399136,street level algorithms a theory at the gaps between policy and decisions,0,10,0,95
+2942185243,retype quick text editing with keyboard and gaze,0,10,0,131
+2941419932,picme interactive visual guidance for taking requested photo composition,0,10,1,257
 2941232686,managing messes in computational notebooks,134,10,133,135
-2941123418,think secure from the beginning a survey with software developers,0,10,1,158
+2941123418,think secure from the beginning a survey with software developers,0,10,1,141
 2964608097,a theory of fermat paths for non line of sight shape reconstruction,121,10,121,121
 2967591898,empirical review of java program repair tools a large scale experiment on 2 141 bugs and 23 551 repair attempts,3,10,3,3
 2966914448,generating automated and online test oracles for simulink models with continuous and uncertain behaviors,44,10,43,45
@@ -99,22 +99,22 @@ paper_id,title,citation_best,negative_count,negative_min,negative_max
 2954691065,view centric performance optimization for database backed web applications,18,10,18,18
 2965266021,boosting for comparison based learning,4,10,4,4
 2949380784,optimizing impression counts for outdoor advertising,33,10,33,33
-2979514732,ebp a wearable system for frequent and comfortable blood pressure monitoring from user s ear,0,10,0,1371
+2979514732,ebp a wearable system for frequent and comfortable blood pressure monitoring from user s ear,0,10,0,397
 2979925109,fluid flexible user interface distribution for ubiquitous multi device interaction,4,10,4,4
-2806709843,datacenter rpcs can be general and fast,40,10,39,41
-2918488807,understanding lifecycle management complexity of datacenter topologies,15,10,15,16
+2806709843,datacenter rpcs can be general and fast,40,10,39,43
+2918488807,understanding lifecycle management complexity of datacenter topologies,15,10,14,16
 2963212338,low latency graph streaming using compressed purely functional trees,1,10,1,1
 2954738632,continuously reasoning about programs using differential bayesian inference,20,10,20,20
 2954518791,towards certified separate compilation for concurrent programs,17,10,17,17
 3104371626,an inductive synthesis framework for verifiable reinforcement learning,72,10,71,73
 2955231257,a typed algebraic approach to parsing,13,10,13,13
 3105155462,optimization and abstraction a synergistic approach for analyzing neural network robustness,49,10,48,50
-2948130259,interventional fairness causal database repair for algorithmic fairness,0,10,1,246
+2948130259,interventional fairness causal database repair for algorithmic fairness,0,10,0,941
 2963311060,spectre attacks exploiting speculative execution,1495,10,1132,1667
 2968103728,underwater backscatter networking,99,10,97,101
 2948795993,variance reduction in gradient exploration for online learning to rank,15,10,15,15
 2964022882,computationally efficient estimation of the spectral gap of a markov chain,1,10,1,1
-2948130259,interventional fairness causal database repair for algorithmic fairness,0,10,0,75
+2948130259,interventional fairness causal database repair for algorithmic fairness,0,10,1,255
 2974073952,scaling symbolic evaluation for automated verification of systems code with serval,63,10,61,65
 2963620995,the reachability problem for petri nets is not elementary,4,10,4,4
 2980899416,tiptext eyes free text entry on a fingertip keyboard,70,10,68,72
@@ -126,15 +126,15 @@ paper_id,title,citation_best,negative_count,negative_min,negative_max
 2963033005,learning to ask good questions ranking clarification questions using neural expected value of perfect information,9,10,9,9
 2963686541,let s do it again a first computational approach to detecting adverbial presupposition triggers,10,10,10,10
 2796382388,agile 3d sketching with air scaffolding,18,10,18,18
-2796228338,pinpointing precise head and eye based target selection for augmented reality,0,10,0,186
-2795857247,data illustrator augmenting vector design tools with lazy data binding for expressive visualization authoring,0,10,0,446
-2795566406,a stalker s paradise how intimate partner abusers exploit technology,0,10,0,88
+2796228338,pinpointing precise head and eye based target selection for augmented reality,0,10,1,70
+2795857247,data illustrator augmenting vector design tools with lazy data binding for expressive visualization authoring,0,10,3,26
+2795566406,a stalker s paradise how intimate partner abusers exploit technology,0,10,0,124
 2787712888,voice interfaces in everyday life,552,10,522,573
-2795389852,let s talk about race identity chatbots and ai,0,10,0,84
-2795783386,semi automated coding for qualitative research a user centered inquiry and initial prototypes,0,10,0,78
-2796076588,wall room scale interactive and context aware sensing,0,10,0,52
+2795389852,let s talk about race identity chatbots and ai,0,10,0,49
+2795783386,semi automated coding for qualitative research a user centered inquiry and initial prototypes,0,10,0,77
+2796076588,wall room scale interactive and context aware sensing,0,10,0,204
 2795442664,expressive time series querying with hand drawn scale free sketches,51,10,51,51
-2795619128,project zanzibar a portable and flexible tangible interaction platform,0,10,0,98
+2795619128,project zanzibar a portable and flexible tangible interaction platform,0,10,2,193
 2796058046,extending manual drawing practices with artist centric programming tools,42,10,42,42
 2964185501,taskonomy disentangling task transfer learning,82,10,82,82
 2899462170,the impact of regular expression denial of service redos in practice an empirical study at the ecosystem scale,86,10,84,89
@@ -146,8 +146,8 @@ paper_id,title,citation_best,negative_count,negative_min,negative_max
 2963143631,obfuscated gradients give a false sense of security circumventing defenses to adversarial examples,1077,10,1018,1144
 2965749257,delayed impact of fair machine learning,11,10,11,11
 3105413283,large scale analysis of framework specific exceptions in android apps,57,10,57,57
-2794889478,spatio temporal context reduction a pointer analysis based static approach for detecting use after free vulnerabilities,0,10,0,48
-2794694213,identifying design problems in the source code a grounded theory,0,10,0,88
+2794889478,spatio temporal context reduction a pointer analysis based static approach for detecting use after free vulnerabilities,0,10,0,32
+2794694213,identifying design problems in the source code a grounded theory,0,10,1,751
 2795338679,static automated program repair for heap properties,71,10,71,71
 2962804757,automated localization for unreproducible builds,32,10,32,32
 2794901250,generalized data structure synthesis,31,10,31,31
@@ -158,12 +158,12 @@ paper_id,title,citation_best,negative_count,negative_min,negative_max
 3092809319,from conjunctive queries to instance queries in ontology mediated querying,1,10,1,1
 2962756936,what game are we playing end to end learning in normal and extensive form games,56,10,56,56
 2807873315,commonsense knowledge aware conversation generation with graph attention,517,10,481,532
-3098276446,adversarial attacks on neural networks for graph data,350,10,333,358
-2896992572,skycore moving core to the edge for untethered and reliable uav based lte networks,0,10,0,129
+3098276446,adversarial attacks on neural networks for graph data,350,10,332,358
+2896992572,skycore moving core to the edge for untethered and reliable uav based lte networks,0,10,3,198
 2890192685,non delusional q learning and value iteration,27,10,27,27
-2963755523,neural ordinary differential equations,2108,10,1816,2422
+2963755523,neural ordinary differential equations,2108,10,1778,2422
 2798641544,netchain scale free sub rtt coordination,164,10,160,169
-2897044322,rept reverse debugging of failures in deployed software,37,10,34,39
+2897044322,rept reverse debugging of failures in deployed software,37,10,34,40
 2899396876,legoos a disseminated distributed os for hardware resource disaggregation,140,10,134,146
 2963823348,orca differential bug localization in large scale services,8,10,8,8
 2964240296,program synthesis using conflict driven learning,101,10,100,102
@@ -175,23 +175,23 @@ paper_id,title,citation_best,negative_count,negative_min,negative_max
 2876796450,inferring persistent interdomain congestion,88,10,88,88
 2799048248,should i follow the crowd a probabilistic analysis of the effectiveness of popularity in recommender systems,13,10,13,13
 2771541561,a refined mean field approximation,32,10,32,32
-2798891709,surf practical range query filtering with fast succinct tries,0,10,0,470
+2798891709,surf practical range query filtering with fast succinct tries,0,10,1,113
 2896381102,authoring and verifying human robot interactions,52,10,51,53
-2896806675,porta profiling software tutorials using operating system wide activity tracing,0,10,0,37
-2897456565,resi a highly flexible pressure sensitive imperceptible textile interface based on resistive yarns,0,10,1,177
+2896806675,porta profiling software tutorials using operating system wide activity tracing,0,10,3,77
+2897456565,resi a highly flexible pressure sensitive imperceptible textile interface based on resistive yarns,0,10,0,1003
 3105298605,the ubiquity of large graphs and surprising challenges of graph processing extended survey,78,10,78,78
-2788150400,highlife higher arity fact harvesting,0,10,3,183
+2788150400,highlife higher arity fact harvesting,0,10,0,39
 2963019788,label free supervision of neural networks with physics and domain knowledge,279,10,276,282
 2963069394,probabilistic typology deep generative models of vowel inventories,7,10,7,7
 2591131751,designing gamified applications that make safe driving more engaging,37,10,37,37
-2611348597,illumination aesthetics light as a creative material within computational design,0,10,4,313
-2611579020,sharevr enabling co located experiences for virtual reality between hmd and non hmd users,0,10,1,559
-2611586694,explaining the gap visualizing one s predictions improves recall and comprehension of data,0,10,0,548
+2611348597,illumination aesthetics light as a creative material within computational design,0,10,2,192
+2611579020,sharevr enabling co located experiences for virtual reality between hmd and non hmd users,0,10,1,87
+2611586694,explaining the gap visualizing one s predictions improves recall and comprehension of data,0,10,2,85
 2611474773,what is interaction,137,10,136,138
-2610874624,bignav bayesian information gain for guiding multiscale navigation,0,10,0,168
+2610874624,bignav bayesian information gain for guiding multiscale navigation,0,10,0,573
 2611632447,modelling learning of new keyboard layouts,47,10,47,47
-2610281177,flash organizations crowdsourcing complex work by structuring crowds as organizations,0,10,0,414
-2610874523,reflective practicum a framework of sensitising concepts to design for transformative reflection,0,10,1,106
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+2610874523,reflective practicum a framework of sensitising concepts to design for transformative reflection,0,10,0,161
 2610929834,fingertip tactile devices for virtual object manipulation and exploration,134,10,133,135
 2558581619,what can be predicted from six seconds of driver glances,47,10,47,47
 2610414453,design and evaluation of a data driven password meter,118,10,117,119
@@ -220,34 +220,34 @@ paper_id,title,citation_best,negative_count,negative_min,negative_max
 2618267215,verified models and reference implementations for the tls 1 3 standard candidate,168,10,165,172
 2744387122,re architecting datacenter networks and stacks for low latency and high performance,316,10,305,324
 2743093301,language directed hardware design for network performance monitoring,234,10,231,236
-2742124187,bitfunnel revisiting signatures for search,0,10,0,223
+2742124187,bitfunnel revisiting signatures for search,0,10,0,177
 2576238278,accelerating performance inference over closed systems by asymptotic methods,5,10,5,5
 2613088476,parallelizing sequential graph computations,37,10,37,37
 3101492167,the efficient server audit problem deduplicated re execution and the web,15,10,14,16
-2616028256,deepxplore automated whitebox testing of deep learning systems,0,10,2,331
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 2765855860,triggering artwork swaps for live animation,16,10,15,16
-2766544714,grabity a wearable haptic interface for simulating weight and grasping in virtual reality,0,10,0,175
-3106143313,aircode unobtrusive physical tags for digital fabrication,0,10,0,76
+2766544714,grabity a wearable haptic interface for simulating weight and grasping in virtual reality,0,10,0,54
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